Parental gene:

RAB18, ENSOCUG00000022307

Aliases:None
Description:RAB18, member RAS oncogene family [Source:HGNC Symbol;Acc:14244]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:16:6635368..6677959(+)


>ENSOCUG00000022307
ATGGACGAGGACGTGCTGACCACCCTGAAGATCCTCATCATCGGCGAGAGCGGAGTCGGCAAGTCCAGCCTGCTGTTGAG
GTTCACAGATGATACTTTTGATCCAGAGCTCGCAGCAACTATAGGTGTCGACTTTAAGGTGAAAACAATTTCAGTGGATG
GAAATAAGGCTAAACTTGCAATATGGGATACTGCTGGTCAAGAGAGGTTTAGAACTCTAACTCCAAGTTATTACAGAGGT
GCACAGGGTGTTATTTTAGTTTATGATGTCACGAGAAGGGACACCTTTGTTAAACTGGATAATTGGTTAAATGAATTGGA
AACATACTGTACGAGAAATGACATAGTAAACATGCTAGTTGGAAATAAAATTGATAAGGAAAATCGTGAAGTCGACAGAA
ATGAAGGCCTGAAGTTTGCACGGAAGCATTCCATGTTATTTATAGAGGCAAGTGCAAAAACGTGTGATGGTGTCCAGTGT
GCCTTTGAGGAGCTTGTCGAAAAGATCATTCAGACACCCGGACTGTGGGAGAGCGAGACCCAGAACAAAGGAGTGAAACT
GTCGCACAGGGAAGAAGGCCACGGGGCAGGCGCCTGCAGTGGTTACTGCTCTGTGCTGTGA

Library Parental gene expression (RPM)
SRP017611_brain 31 .95 RPM
SRP017611_kidney 31 .62 RPM
SRP017611_liver 16 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009871 ortholog_one2one 1 retrogene
retro_btau_1691,
Choloepus hoffmanni ENSCHOG00000005565 ortholog_one2one 4 retrogenes
retro_chof_2391, retro_chof_256, retro_chof_396, retro_chof_846,
Cavia porcellus ENSCPOG00000002234 ortholog_one2one 2 retrogenes
retro_cpor_633, retro_cpor_652,
Dipodomys ordii ENSDORG00000014338 ortholog_one2one 1 retrogene
retro_dord_419,
Monodelphis domestica ENSMODG00000008253 ortholog_one2many 1 retrogene
retro_mdom_146,
Otolemur garnettii ENSOGAG00000028015 ortholog_one2one 2 retrogenes
retro_ogar_2587, retro_ogar_2973,
Rattus norvegicus ENSRNOG00000018972 ortholog_one2one 2 retrogenes
retro_rnor_2744, retro_rnor_2962,
Sarcophilus harrisii ENSSHAG00000007613 ortholog_one2one 1 retrogene
retro_shar_281,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_841 63.19 77.67
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2. retro_ocun_1699 98.06 100.00
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Download FASTA sequences of all ENSOCUG00000022307 retrocopies