RetrogeneDB ID: | retro_shar_281 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841199.1:2036729..2037203(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB18 | ||
Ensembl ID: | ENSSHAG00000007613 | ||
Aliases: | None | ||
Description: | RAB18, member RAS oncogene family [Source:HGNC Symbol;Acc:14244] |
Percent Identity: | 88.61 % |
Parental protein coverage: | 77.07 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | KTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVK |
KTISVDGNKAKLAIWD.AGQE.FRTLTPSYYRGAQGVILVYDV.RRD.F.KLDNWLNELETYC.RN.IVK | |
Retrocopy | KTISVDGNKAKLAIWDIAGQEHFRTLTPSYYRGAQGVILVYDVKRRDIFIKLDNWLNELETYCMRNNIVK |
Parental | MLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVRL |
MLVG.KIDKENRE.DRNEGL.FA.KHSMLFIEASAKTCDG.QCAFEE..EKIIQTPGL.ESENQNKG.RL | |
Retrocopy | MLVGKKIDKENREADRNEGLEFAQKHSMLFIEASAKTCDGIQCAFEEILEKIIQTPGL*ESENQNKGGRL |
Parental | SHREESHGGACGGYCSML |
SHRE.SHGGA.GGYCSML | |
Retrocopy | SHRE*SHGGAYGGYCSML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009871 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005565 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000002234 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000014338 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008253 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000022307 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000028015 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000018972 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000007613 | 1 retrocopy |
retro_shar_281 ,
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