Parental gene: | HDAC1, ENSOGAG00000005709 |
| Aliases: | None |
| Description: | histone deacetylase 1 [Source:HGNC Symbol;Acc:4852] |
| Organism: | Bushbaby (Otolemur garnettii) |
| Coordinates: | GL873723.1:203987..247746(+) |
>ENSOGAG00000005709
ATGGCGCAGACGCAGGGCACCAGGAGGAAAGTCTGTTACTACTACGACGGGGATGTTGGAAATTATTATTATGGACAAGG
CCACCCAATGAAGCCTCACCGAATCCGCATGACTCACAATTTGCTACTTAACTATGGTCTCTACCGAAAAATGGAAATCT
ATCGCCCTCATAAAGCCAATGCTGAGGAAATGACCAAGTACCACAGTGATGACTACATTAAATTCTTGCGCTCCATCCGT
CCAGATAACATGTCTGAATACAGCAAGCAGATGCAGAGATTCAACGTTGGTGAGGACTGTCCAGTATTTGATGGCCTGTT
TGAGTTCTGTCAGTTGTCTACTGGTGGCTCTGTGGCAAGTGCTGTGAAACTTAATAAGCAGCAGACGGACATCGCTGTGA
ATTGGGCTGGGGGCCTGCACCATGCAAAGAAGTCCGAGGCATCTGGCTTCTGTTACGTCAATGATATCGTCTTGGCCATC
CTGGAACTGCTAAAGTATCACCAGAGGGTGCTGTATATTGACATTGATATTCACCATGGCGATGGCGTGGAAGAGGCCTT
CTATACCACAGACCGGGTCATGACTGTGTCCTTTCATAAATATGGAGAGTACTTCCCAGGAACTGGGGACCTACGGGATA
TTGGGGCTGGCAAAGGCAAGTATTATGCTGTTAACTACCCGCTCCGAGATGGGATTGATGACGAGTCCTATGAGGCCATT
TTCAAGCCGGTAATGTCCAAAGTAATGGAGATGTTCCAGCCCAGTGCAGTGGTCTTACAGTGTGGCTCAGACTCCCTGTC
TGGGGATCGGTTAGGTTGCTTCAATTTGACCATCAAAGGGCATGCCAAGTGCGTGGAATTTGTCAAAAGCTTCAACCTGC
CTATGTTGATGCTGGGAGGAGGTGGTTACACCATTCGTAATGTTGCTCGATGCTGGACATATGAAACAGCTGTGGCCCTG
GACACAGAGATCCCTAATGAGCTTCCATACAATGACTACTTTGAATACTTTGGTCCAGACTTCAAGCTTCACATCAGCCC
CTCCAATATGACTAACCAGAATACTAATGAATATTTGGAGAAGATCAAACAGCGACTGTTTGAGAACCTCAGGATGCTGC
CCCATGCGCCAGGGGTTCAGATGCAGGCAATTCCTGAGGATGCCATCCCAGAGGAAAGTGGCGATGAGGATGAAGAAGAC
CCTGACAAACGCATCTCCATCTGTTCCTCTGACAAACGAATTGCCTGTGAGGAAGAGTTCTCTGACTCTGATGAGGAAGG
AGAGGGTGGCCGAAAGAATTCTTCCAACTTCAAAAAAGCTAAGAGAGTCAAAACAGAAGATGAAAAAGAGAAAGATCCGG
AAGAGAAGAAAGAAGTTACAGAAGAGGAGAAAACCAAGGAGGAGAAGCCAGAAGCCAAAGGGGTCAAGGAAGAGGTCAAG
TTGGCCTGA
ATGGCGCAGACGCAGGGCACCAGGAGGAAAGTCTGTTACTACTACGACGGGGATGTTGGAAATTATTATTATGGACAAGG
CCACCCAATGAAGCCTCACCGAATCCGCATGACTCACAATTTGCTACTTAACTATGGTCTCTACCGAAAAATGGAAATCT
ATCGCCCTCATAAAGCCAATGCTGAGGAAATGACCAAGTACCACAGTGATGACTACATTAAATTCTTGCGCTCCATCCGT
CCAGATAACATGTCTGAATACAGCAAGCAGATGCAGAGATTCAACGTTGGTGAGGACTGTCCAGTATTTGATGGCCTGTT
TGAGTTCTGTCAGTTGTCTACTGGTGGCTCTGTGGCAAGTGCTGTGAAACTTAATAAGCAGCAGACGGACATCGCTGTGA
ATTGGGCTGGGGGCCTGCACCATGCAAAGAAGTCCGAGGCATCTGGCTTCTGTTACGTCAATGATATCGTCTTGGCCATC
CTGGAACTGCTAAAGTATCACCAGAGGGTGCTGTATATTGACATTGATATTCACCATGGCGATGGCGTGGAAGAGGCCTT
CTATACCACAGACCGGGTCATGACTGTGTCCTTTCATAAATATGGAGAGTACTTCCCAGGAACTGGGGACCTACGGGATA
TTGGGGCTGGCAAAGGCAAGTATTATGCTGTTAACTACCCGCTCCGAGATGGGATTGATGACGAGTCCTATGAGGCCATT
TTCAAGCCGGTAATGTCCAAAGTAATGGAGATGTTCCAGCCCAGTGCAGTGGTCTTACAGTGTGGCTCAGACTCCCTGTC
TGGGGATCGGTTAGGTTGCTTCAATTTGACCATCAAAGGGCATGCCAAGTGCGTGGAATTTGTCAAAAGCTTCAACCTGC
CTATGTTGATGCTGGGAGGAGGTGGTTACACCATTCGTAATGTTGCTCGATGCTGGACATATGAAACAGCTGTGGCCCTG
GACACAGAGATCCCTAATGAGCTTCCATACAATGACTACTTTGAATACTTTGGTCCAGACTTCAAGCTTCACATCAGCCC
CTCCAATATGACTAACCAGAATACTAATGAATATTTGGAGAAGATCAAACAGCGACTGTTTGAGAACCTCAGGATGCTGC
CCCATGCGCCAGGGGTTCAGATGCAGGCAATTCCTGAGGATGCCATCCCAGAGGAAAGTGGCGATGAGGATGAAGAAGAC
CCTGACAAACGCATCTCCATCTGTTCCTCTGACAAACGAATTGCCTGTGAGGAAGAGTTCTCTGACTCTGATGAGGAAGG
AGAGGGTGGCCGAAAGAATTCTTCCAACTTCAAAAAAGCTAAGAGAGTCAAAACAGAAGATGAAAAAGAGAAAGATCCGG
AAGAGAAGAAAGAAGTTACAGAAGAGGAGAAAACCAAGGAGGAGAAGCCAGAAGCCAAAGGGGTCAAGGAAGAGGTCAAG
TTGGCCTGA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ciona intestinalis | ENSCING00000002649 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000013837 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000009948 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000028800 | ortholog_one2many | 1 retrogene | |
| Pelodiscus sinensis | ENSPSIG00000004134 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000009568 | ortholog_one2many | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000008787 | possible_ortholog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000001613 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ogar_2181 | 83.52 | 94.19 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ogar_3022 | 81.78 | 94.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ogar_3313 | 87.44 | 91.91 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOGAG00000005709 retrocopies