Parental gene:

HDAC1, ENSOGAG00000005709

Aliases:None
Description:histone deacetylase 1 [Source:HGNC Symbol;Acc:4852]
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873723.1:203987..247746(+)


>ENSOGAG00000005709
ATGGCGCAGACGCAGGGCACCAGGAGGAAAGTCTGTTACTACTACGACGGGGATGTTGGAAATTATTATTATGGACAAGG
CCACCCAATGAAGCCTCACCGAATCCGCATGACTCACAATTTGCTACTTAACTATGGTCTCTACCGAAAAATGGAAATCT
ATCGCCCTCATAAAGCCAATGCTGAGGAAATGACCAAGTACCACAGTGATGACTACATTAAATTCTTGCGCTCCATCCGT
CCAGATAACATGTCTGAATACAGCAAGCAGATGCAGAGATTCAACGTTGGTGAGGACTGTCCAGTATTTGATGGCCTGTT
TGAGTTCTGTCAGTTGTCTACTGGTGGCTCTGTGGCAAGTGCTGTGAAACTTAATAAGCAGCAGACGGACATCGCTGTGA
ATTGGGCTGGGGGCCTGCACCATGCAAAGAAGTCCGAGGCATCTGGCTTCTGTTACGTCAATGATATCGTCTTGGCCATC
CTGGAACTGCTAAAGTATCACCAGAGGGTGCTGTATATTGACATTGATATTCACCATGGCGATGGCGTGGAAGAGGCCTT
CTATACCACAGACCGGGTCATGACTGTGTCCTTTCATAAATATGGAGAGTACTTCCCAGGAACTGGGGACCTACGGGATA
TTGGGGCTGGCAAAGGCAAGTATTATGCTGTTAACTACCCGCTCCGAGATGGGATTGATGACGAGTCCTATGAGGCCATT
TTCAAGCCGGTAATGTCCAAAGTAATGGAGATGTTCCAGCCCAGTGCAGTGGTCTTACAGTGTGGCTCAGACTCCCTGTC
TGGGGATCGGTTAGGTTGCTTCAATTTGACCATCAAAGGGCATGCCAAGTGCGTGGAATTTGTCAAAAGCTTCAACCTGC
CTATGTTGATGCTGGGAGGAGGTGGTTACACCATTCGTAATGTTGCTCGATGCTGGACATATGAAACAGCTGTGGCCCTG
GACACAGAGATCCCTAATGAGCTTCCATACAATGACTACTTTGAATACTTTGGTCCAGACTTCAAGCTTCACATCAGCCC
CTCCAATATGACTAACCAGAATACTAATGAATATTTGGAGAAGATCAAACAGCGACTGTTTGAGAACCTCAGGATGCTGC
CCCATGCGCCAGGGGTTCAGATGCAGGCAATTCCTGAGGATGCCATCCCAGAGGAAAGTGGCGATGAGGATGAAGAAGAC
CCTGACAAACGCATCTCCATCTGTTCCTCTGACAAACGAATTGCCTGTGAGGAAGAGTTCTCTGACTCTGATGAGGAAGG
AGAGGGTGGCCGAAAGAATTCTTCCAACTTCAAAAAAGCTAAGAGAGTCAAAACAGAAGATGAAAAAGAGAAAGATCCGG
AAGAGAAGAAAGAAGTTACAGAAGAGGAGAAAACCAAGGAGGAGAAGCCAGAAGCCAAAGGGGTCAAGGAAGAGGTCAAG
TTGGCCTGA

Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000002649 ortholog_one2many 1 retrogene
retro_cint_18,
Myotis lucifugus ENSMLUG00000013837 possible_ortholog 1 retrogene
retro_mluc_283,
Macaca mulatta ENSMMUG00000009948 possible_ortholog 2 retrogenes
retro_mmul_1085, retro_mmul_2518,
Mus musculus ENSMUSG00000028800 ortholog_one2many 1 retrogene
retro_mmus_153,
Pelodiscus sinensis ENSPSIG00000004134 ortholog_one2one 1 retrogene
retro_psin_44,
Rattus norvegicus ENSRNOG00000009568 ortholog_one2many 3 retrogenes
retro_rnor_1091, retro_rnor_1098, retro_rnor_2457,
Sarcophilus harrisii ENSSHAG00000008787 possible_ortholog 1 retrogene
retro_shar_573,
Tursiops truncatus ENSTTRG00000001613 ortholog_one2one 1 retrogene
retro_ttru_1236,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ogar_2181 83.52 94.19
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2. retro_ogar_3022 81.78 94.81
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3. retro_ogar_3313 87.44 91.91
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Download FASTA sequences of all ENSOGAG00000005709 retrocopies