Parental gene:

LSM5, ENSOPRG00000002443

Aliases:None
Description:LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17162]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_3124:495118..497021(-)


>ENSOPRG00000002443
CTGGTGGATAAATGCATAGGGTCCAGAATCCACATCGTGATGAAGAGCGATAAAGAAATTGTCGGCACGCTCCTGGGTTT
TGATGACTTTGTCAATATGGTATTAGAAGATGTTACCGAATTTGAAATCACACCAGAAGGAAGAAGGATCACTAAACTAG
ATCAAATATTGCTAAATGGAAATAATATAACAATGCTGGTGCCCGGAGGAGAAGGGCCTGAGGTGTGA

Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009185 possible_ortholog 3 retrogenes
retro_cjac_1883, retro_cjac_2760, retro_cjac_3068,
Echinops telfairi ENSETEG00000018068 possible_ortholog 8 retrogenes
retro_etel_1305, retro_etel_1502, retro_etel_1907, retro_etel_198, retro_etel_2054, retro_etel_2193, retro_etel_454, retro_etel_964,
Homo sapiens ENSG00000106355 ortholog_one2one 2 retrogenes
retro_hsap_3703, retro_hsap_4216,
Gorilla gorilla ENSGGOG00000010325 ortholog_one2one 2 retrogenes
retro_ggor_2504, retro_ggor_2824,
Microcebus murinus ENSMICG00000005353 ortholog_one2one 3 retrogenes
retro_mmur_1345, retro_mmur_69, retro_mmur_950,
Myotis lucifugus ENSMLUG00000017028 ortholog_one2one 1 retrogene
retro_mluc_2439,
Oryctolagus cuniculus ENSOCUG00000029043 ortholog_one2one 5 retrogenes
retro_ocun_1284, retro_ocun_1452, retro_ocun_1513, retro_ocun_1556, retro_ocun_903,
Pongo abelii ENSPPYG00000017661 possible_ortholog 1 retrogene
retro_pabe_3449,
Rattus norvegicus ENSRNOG00000042126 possible_ortholog 3 retrogenes
retro_rnor_1171, retro_rnor_567, retro_rnor_694,
Sus scrofa ENSSSCG00000026064 ortholog_one2one 1 retrogene
retro_sscr_385,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_26 85.33 100.00
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2. retro_opri_562 63.16 98.67
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3. retro_opri_701 85.33 100.00
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Download FASTA sequences of all ENSOPRG00000002443 retrocopies