RetrogeneDB ID: | retro_opri_562 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_17228:53261..53481(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LSM5 | ||
Ensembl ID: | ENSOPRG00000002443 | ||
Aliases: | None | ||
Description: | LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17162] |
Percent Identity: | 63.16 % |
Parental protein coverage: | 98.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQI-LLNGNN-ITMLVPG |
..KC.GSRIHI.MK...EIV..LLG..DFV...L..VTEFEI.PEGR.ITKL.Q..LL.GNN..T.LVPG | |
Retrocopy | LNKCTGSRIHILMKNNMEIVSILLGLNDFVSILLKNVTEFEIIPEGRWITKLVQV<LLKGNN<STTLVPG |
Parental | GEGPEV |
.E.P.V | |
Retrocopy | EESPQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009185 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000018068 | 8 retrocopies | |
Homo sapiens | ENSG00000106355 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000010325 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000005353 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000017028 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000029043 | 5 retrocopies | |
Ochotona princeps | ENSOPRG00000002443 | 3 retrocopies |
retro_opri_26, retro_opri_562 , retro_opri_701,
|
Pongo abelii | ENSPPYG00000017661 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000042126 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000026064 | 1 retrocopy |