Parental gene:

ENSPPYG00000006487

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:15:49211813..49229045(-)


>ENSPPYG00000006487
AGAAGCGGGGTCAAAGGGAGCACTATGTCTGCGGAAGTCCCCGAGGCAGCCTCCGCGGAGGAGCAGAAGGAAATGGAAGA
TAAAGTGACTAGTCCAGAGAAAGCAGAAGAAGCAAAATTAAAAGCAAGATATCCTCATCTGGGACAAAAGCCTGGAGGTT
CAGATTTCTTAAGGAAACGGTTGCAGAAAGGGCAAAAATATTTTGATTCTGGGGATTACAACATGGCTAAAGCAAAAATG
AAGAACAAGCAACTTCCTACTGCAGCTCCAGATAAGACGGAGGTCACTGGTGACCACATTCCCACTCCGCAGGACCTTCC
TCAACGGAAACCATCCCTTGTTGCTAGCAAGCTGGCTGGCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 52 .91 RPM
SRP007412_cerebellum 14 .71 RPM
SRP007412_heart 7 .86 RPM
SRP007412_kidney 8 .78 RPM
SRP007412_liver 4 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011022 ortholog_one2many 5 retrogenes
retro_btau_1259, retro_btau_1821, retro_btau_1845, retro_btau_952, retro_btau_981,
Canis familiaris ENSCAFG00000032515 ortholog_one2many 2 retrogenes
retro_cfam_1375, retro_cfam_1402,
Cavia porcellus ENSCPOG00000011228 possible_ortholog 1 retrogene
retro_cpor_1148,
Dasypus novemcinctus ENSDNOG00000004474 ortholog_one2many 9 retrogenes
retro_dnov_1086, retro_dnov_1576, retro_dnov_1960, retro_dnov_2150, retro_dnov_2427, retro_dnov_557, retro_dnov_616, retro_dnov_644, retro_dnov_662,
Dipodomys ordii ENSDORG00000011321 ortholog_one2many 2 retrogenes
retro_dord_194, retro_dord_33,
Echinops telfairi ENSETEG00000015550 ortholog_one2many 1 retrogene
retro_etel_585,
Homo sapiens ENSG00000128989 ortholog_one2many 2 retrogenes
retro_hsap_2130, retro_hsap_3280,
Gorilla gorilla ENSGGOG00000025250 ortholog_one2many 1 retrogene
retro_ggor_198,
Loxodonta africana ENSLAFG00000000755 possible_ortholog 2 retrogenes
retro_lafr_1058, retro_lafr_574,
Macaca mulatta ENSMMUG00000008344 possible_ortholog 1 retrogene
retro_mmul_1001,
Nomascus leucogenys ENSNLEG00000006551 possible_ortholog 2 retrogenes
retro_nleu_2533, retro_nleu_2884,
Oryctolagus cuniculus ENSOCUG00000015489 possible_ortholog 10 retrogenes
retro_ocun_1182, retro_ocun_1297, retro_ocun_1398, retro_ocun_1573, retro_ocun_1731, retro_ocun_1768, retro_ocun_310, retro_ocun_473, retro_ocun_479, retro_ocun_698,
Otolemur garnettii ENSOGAG00000013865 possible_ortholog 1 retrogene
retro_ogar_591,
Pongo abelii ENSPPYG00000000893 within_species_paralog 2 retrogenes
retro_pabe_1803, retro_pabe_2081,
Pan troglodytes ENSPTRG00000042183 ortholog_one2many 1 retrogene
retro_ptro_1559,
Pteropus vampyrus ENSPVAG00000004012 possible_ortholog 1 retrogene
retro_pvam_205,
Sus scrofa ENSSSCG00000004618 ortholog_one2many 1 retrogene
retro_sscr_603,
Ictidomys tridecemlineatus ENSSTOG00000003677 ortholog_one2many 7 retrogenes
retro_itri_1075, retro_itri_1290, retro_itri_1339, retro_itri_1643, retro_itri_1657, retro_itri_1865, retro_itri_594,
Tursiops truncatus ENSTTRG00000004804 ortholog_one2many 1 retrogene
retro_ttru_172,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_120 95.54 93.33
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2. retro_pabe_1923 88.03 96.67
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Download FASTA sequences of all ENSPPYG00000006487 retrocopies