Parental gene:

RSL24D1, ENSPPYG00000006495

Aliases:RSL24D1, C15orf15
Description:Probable ribosome biogenesis protein RLP24 [Source:UniProtKB/Swiss-Prot;Acc:Q5RF04]
Organism:Orangutan (Pongo abelii)
Coordinates:15:51965652..51981566(-)


>ENSPPYG00000006495
ATGCGTATCGAGAAGTGTTATTTCTGTTCGGGGCCCATCTATCCTGGACACGGCATGATGTTCGTCCGCAACGATTGCAA
GGTGTTCAGATTTTGCAAATCTAAATGTCATAAAAACTTTAAAAAGAGGCGCAATCCTCGCAAAGTTAGGTGGACCAAAG
CATTCCGGAAAGCAGCTGGTAAAGAGCTTACAGTGGATAATTCATTTGAATTTGAAAAACGTAGAAATGAACCTATCAAA
TACCAGCGAGAGCTATGGAATAAAACTATTGATGCAATGAAGAGAGTTGAAGAGATCAAACAGAAGCGCCAAGCTAAATT
TATAATGAACAGATTGAAGAAAAATAAAGAGCTACAGAAAGTTCAGGATATCAAAGAAGTCAAGCAAAACATCCATCTTA
TCCGAGCCCCTCTTGCCGGCAAAGGGAAGCAGCTGGAAGAGAAAATGGTACAGCAGTTACAAGAGGATGTGGACATGGAA
GATGCTCCTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 19 .96 RPM
SRP007412_cerebellum 25 .78 RPM
SRP007412_heart 15 .68 RPM
SRP007412_kidney 17 .70 RPM
SRP007412_liver 13 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001342 ortholog_one2one 1 retrogene
retro_btau_1304,
Canis familiaris ENSCAFG00000015904 ortholog_one2one 1 retrogene
retro_cfam_1744,
Choloepus hoffmanni ENSCHOG00000011799 ortholog_one2one 9 retrogenes
retro_chof_112, retro_chof_1237, retro_chof_1314, retro_chof_1357, retro_chof_1938, retro_chof_243, retro_chof_67, retro_chof_809, retro_chof_896,
Callithrix jacchus ENSCJAG00000000795 ortholog_one2many 2 retrogenes
retro_cjac_109, retro_cjac_7,
Dasypus novemcinctus ENSDNOG00000010812 ortholog_one2one 2 retrogenes
retro_dnov_858, retro_dnov_954,
Equus caballus ENSECAG00000018861 ortholog_one2many 1 retrogene
retro_ecab_30,
Erinaceus europaeus ENSEEUG00000006755 ortholog_one2one 1 retrogene
retro_eeur_50,
Felis catus ENSFCAG00000019272 ortholog_one2one 1 retrogene
retro_fcat_851,
Homo sapiens ENSG00000137876 ortholog_one2one 17 retrogenes
retro_hsap_1049, retro_hsap_1125, retro_hsap_1355, retro_hsap_1635, retro_hsap_1829, retro_hsap_1887, retro_hsap_1941, retro_hsap_1963, retro_hsap_2268, retro_hsap_2467, retro_hsap_3378, retro_hsap_338, retro_hsap_3566, retro_hsap_3861, retro_hsap_4015, retro_hsap_4101, retro_hsap_894,
Gorilla gorilla ENSGGOG00000005195 ortholog_one2one 15 retrogenes
retro_ggor_1055, retro_ggor_1081, retro_ggor_1151, retro_ggor_1194, retro_ggor_1235, retro_ggor_1412, retro_ggor_1536, retro_ggor_1688, retro_ggor_2286, retro_ggor_2406, retro_ggor_2600, retro_ggor_2697, retro_ggor_2754, retro_ggor_359, retro_ggor_879,
Microcebus murinus ENSMICG00000002621 ortholog_one2one 3 retrogenes
retro_mmur_1378, retro_mmur_306, retro_mmur_952,
Myotis lucifugus ENSMLUG00000011976 ortholog_one2one 4 retrogenes
retro_mluc_1415, retro_mluc_1512, retro_mluc_2173, retro_mluc_2320,
Macaca mulatta ENSMMUG00000020693 ortholog_one2one 16 retrogenes
retro_mmul_1030, retro_mmul_1107, retro_mmul_1257, retro_mmul_1363, retro_mmul_1406, retro_mmul_1560, retro_mmul_1824, retro_mmul_1907, retro_mmul_2105, retro_mmul_2364, retro_mmul_322, retro_mmul_424, retro_mmul_582, retro_mmul_599, retro_mmul_817, retro_mmul_872,
Monodelphis domestica ENSMODG00000007966 ortholog_one2one 1 retrogene
retro_mdom_825,
Mustela putorius furo ENSMPUG00000002228 ortholog_one2one 1 retrogene
retro_mputfur_514,
Mus musculus ENSMUSG00000032215 ortholog_one2one 1 retrogene
retro_mmus_1695,
Nomascus leucogenys ENSNLEG00000006578 ortholog_one2one 16 retrogenes
retro_nleu_1289, retro_nleu_1321, retro_nleu_1392, retro_nleu_1468, retro_nleu_1779, retro_nleu_1809, retro_nleu_185, retro_nleu_2309, retro_nleu_2449, retro_nleu_2606, retro_nleu_2874, retro_nleu_2974, retro_nleu_386, retro_nleu_570, retro_nleu_919, retro_nleu_967,
Oryctolagus cuniculus ENSOCUG00000007447 ortholog_one2one 2 retrogenes
retro_ocun_1108, retro_ocun_1899,
Otolemur garnettii ENSOGAG00000010400 ortholog_one2one 15 retrogenes
retro_ogar_1135, retro_ogar_1320, retro_ogar_1433, retro_ogar_1539, retro_ogar_1876, retro_ogar_1947, retro_ogar_2088, retro_ogar_2171, retro_ogar_2579, retro_ogar_3029, retro_ogar_3154, retro_ogar_3174, retro_ogar_3239, retro_ogar_3445, retro_ogar_619,
Ochotona princeps ENSOPRG00000013115 ortholog_one2one 4 retrogenes
retro_opri_1047, retro_opri_1226, retro_opri_66, retro_opri_777,
Pan troglodytes ENSPTRG00000007094 ortholog_one2one 16 retrogenes
retro_ptro_1103, retro_ptro_1164, retro_ptro_1268, retro_ptro_1296, retro_ptro_1311, retro_ptro_1426, retro_ptro_1607, retro_ptro_2422, retro_ptro_2631, retro_ptro_270, retro_ptro_2725, retro_ptro_2783, retro_ptro_617, retro_ptro_679, retro_ptro_715, retro_ptro_929,
Pteropus vampyrus ENSPVAG00000004093 ortholog_one2one 3 retrogenes
retro_pvam_331, retro_pvam_619, retro_pvam_671,
Rattus norvegicus ENSRNOG00000007630 ortholog_one2one 2 retrogenes
retro_rnor_1945, retro_rnor_506,
Sarcophilus harrisii ENSSHAG00000011494 ortholog_one2one 1 retrogene
retro_shar_465,
Sus scrofa ENSSSCG00000024983 ortholog_one2one 1 retrogene
retro_sscr_916,
Ictidomys tridecemlineatus ENSSTOG00000009408 ortholog_one2many 6 retrogenes
retro_itri_100, retro_itri_1246, retro_itri_1388, retro_itri_1605, retro_itri_1699, retro_itri_1767,
Tupaia belangeri ENSTBEG00000010750 ortholog_one2one 9 retrogenes
retro_tbel_1552, retro_tbel_2292, retro_tbel_3033, retro_tbel_4025, retro_tbel_4076, retro_tbel_4138, retro_tbel_4462, retro_tbel_4711, retro_tbel_720,
Tarsius syrichta ENSTSYG00000001271 ortholog_one2one 1 retrogene
retro_tsyr_677,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_771 70.19 61.96
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2. retro_pabe_875 83.96 64.42
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3. retro_pabe_930 64.81 99.39
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4. retro_pabe_1123 76.22 99.39
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5. retro_pabe_1350 83.58 81.60
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6. retro_pabe_1499 90.51 96.93
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7. retro_pabe_1568 85.91 91.41
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8. retro_pabe_1602 87.88 80.98
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9. retro_pabe_1614 85.39 54.60
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10. retro_pabe_1623 81.37 61.96
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11. retro_pabe_1726 77.50 96.93
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12. retro_pabe_1819 81.10 99.39
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13. retro_pabe_1873 69.93 87.12
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14. retro_pabe_1949 83.95 98.77
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15. retro_pabe_2774 82.10 97.55
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16. retro_pabe_2939 88.27 99.39
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17. retro_pabe_3046 77.11 99.39
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18. retro_pabe_3297 80.23 52.76
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19. retro_pabe_3359 89.63 99.39
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Download FASTA sequences of all ENSPPYG00000006495 retrocopies