RetrogeneDB ID: | retro_itri_100 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393382.1:6540024..6540516(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000020617 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000009408 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.64 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFE |
.R.EKCYFCSGPIYPGHGMM.V.NDCKVFRFCK.KCHKNFKKKRNPRKVRWTKAF.KAAG.ELTVDNSFE | |
Retrocopy | LRMEKCYFCSGPIYPGHGMMLVHNDCKVFRFCKYKCHKNFKKKRNPRKVRWTKAFWKAAGTELTVDNSFE |
Parental | FEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAPLAG |
.EK.RNE.VKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLK.NKELQKVQDIKEVKQNIHL.RAPLAG | |
Retrocopy | SEKPRNESVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKRNKELQKVQDIKEVKQNIHLVRAPLAG |
Parental | KGKQLEEKMVQQLQQDVDMEDVS |
KGKQLEEKMVQQLQQDVDMEDVS | |
Retrocopy | KGKQLEEKMVQQLQQDVDMEDVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |