Parental gene:

SUPT4H1, ENSPPYG00000008233

Aliases:None
Description:transcription elongation factor SPT4 [Source:RefSeq peptide;Acc:NP_001129015]
Organism:Orangutan (Pongo abelii)
Coordinates:17:33793072..33800167(+)


>ENSPPYG00000008233
ATGGCCCTGGAGACGGTGCCGAAGGACCTGCGGCATCTAAGGGCCTGTTTGCTGTGTTCGCTGGTCAAGACTATAGACCA
GTTTGAATATGATGGTTGTGACAATTGTGATGCATATCTACAAATGAAGGGTAACCGAGAGATGGTATATGACTGCACCA
GCTCTTCCTTTGATGGAATCATTGCGATGATGAGTCCAGAGGACAGCTGGGTCTCCAAGTGGCAGCGAGTCAGTAACTTT
AAGCCAGGTGTATATGCGGTGTCAGTCACTGGTCGCCTGCCCCAAGGAATCGTGCGGGAGCTGAAAAGTCGAGGAGTGGC
CTACAAATCCAGAGACACAGCTATTAAGACCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 50 .43 RPM
SRP007412_cerebellum 51 .32 RPM
SRP007412_heart 26 .25 RPM
SRP007412_kidney 49 .69 RPM
SRP007412_liver 40 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000017524 ortholog_one2one 2 retrogenes
retro_cfam_1399, retro_cfam_553,
Homo sapiens ENSG00000213246 ortholog_one2one 2 retrogenes
retro_hsap_1081, retro_hsap_2280,
Gorilla gorilla ENSGGOG00000007232 ortholog_one2one 2 retrogenes
retro_ggor_1693, retro_ggor_854,
Macropus eugenii ENSMEUG00000010164 ortholog_one2one 1 retrogene
retro_meug_2079,
Myotis lucifugus ENSMLUG00000025583 possible_ortholog 1 retrogene
retro_mluc_761,
Macaca mulatta ENSMMUG00000007579 ortholog_one2one 2 retrogenes
retro_mmul_1005, retro_mmul_842,
Mus musculus ENSMUSG00000020485 ortholog_one2one 2 retrogenes
retro_mmus_2857, retro_mmus_633,
Nomascus leucogenys ENSNLEG00000008159 ortholog_one2one 3 retrogenes
retro_nleu_1619, retro_nleu_1962, retro_nleu_2714,
Oryctolagus cuniculus ENSOCUG00000025823 ortholog_one2one 2 retrogenes
retro_ocun_1613, retro_ocun_1636,
Pan troglodytes ENSPTRG00000009451 ortholog_one2one 2 retrogenes
retro_ptro_1614, retro_ptro_735,
Pteropus vampyrus ENSPVAG00000002320 ortholog_one2one 1 retrogene
retro_pvam_477,
Rattus norvegicus ENSRNOG00000007845 ortholog_one2one 3 retrogenes
retro_rnor_1255, retro_rnor_1973, retro_rnor_556,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1940 88.24 58.12
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Download FASTA sequences of all ENSPPYG00000008233 retrocopies