Parental gene:

HADHB, ENSPPYG00000012582

Aliases:None
Description:hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit [Source:HGNC Symbol;Acc:4803]
Organism:Orangutan (Pongo abelii)
Coordinates:2a:85863499..85908312(-)


>ENSPPYG00000012582
ATGACTACTATCTTGACTTACCCCTTTAAAAATCTTCCTGCTGCATCAAAATGGGCCCTCAGATTTTCCATAAGACCTCT
GAGCTGTTCCTCCCAGCTACGAGCTGCCCCAGCTGTCCAGACCAAAACGAAGAAGACATTAGCCAAACCCAATATAAGGA
ATGTTGTGGTGGTGGATGGTGTTCGCACTCCATTTTTGCTGTCCGGCACATCATATAAAGACTTGATGCCACATGATTTG
GCTAGAGCAGCACTTACGGGTTTGTTGCATCGGACCAGTGTCCCTAAGGAAGTAGTTGATTATATCATCTTTGGCACAGT
TATTCAAGAAGTGAAAACAAGCAATGTGGCTAGAGAGGCTGCTCTTGGAGCTGGCTTCTCTGACAAGACTCCTGCTCACA
CTGTCACCATGGCTTGTATCTCTGCCAACCAAGCCATGACCACAGGTGTTGGCTTGATTGCTTCTGGCCAGTGTGATGTG
ATCGTCGCAGGTGGTGTTGAGTTGATGTCCGATATCCCTATTCGTCACTCAAGGAAAATGAGAAAACTGATGCTTGATCT
CAATAAGGCCAAATCTATGGGCCAGCGACTGTCTTTAATCTCTAAATTCCGATTTAATTTCCTAGCACCTGAGCTCCCTG
CAGTTGCTGAGTTCTCCACCAACGAGACCATGGGCCACTCTGCAGACCGACTGGCCGCTGCCTTTGCTGTTTCTCGGCTG
GAACAGGATGAATACGCACTGCGCTCTCACAGTCTAGCCAAGAAGGCACAGGATGAAGGACTCCTTTCTGATGTGGTACC
CTTCAAAGTACCAGGAAAAGATACAGTTACCAAAGATAATGGCATCCGTCCTTCCTCACTGGAGCAGATGGCCAAACTAA
AACCTGCATTCATCAAGCCCTATGGCACAGTGACAGCTGCAAATTCTTCTTTCTTGACTGATGGTGCATCTATGGCAGAG
GAAAAGGCTCTGGCCATGGGTTATAAGCCGAAGGCATATTTGAGGGATTTTATGTATGTGTCTCAGGATCCAAAAGATCA
ACTATTACTTGGACCAACATATGCTACTCCAAAAGTTCTAGAAAAGGCAGGATTGACCATTAATGATATTGATGCTTTTG
AATTTCATGAAGCTTTCTCGGGTCAGATTTTGGCAAATTTTAAAGCCATGGATTCTGATTGGTTTGCAGAAAACTACATG
AGTAGAAAAACGAAGGTTGGATTGCCTCCTTTGGAGAAGTTTAATAACTGGGGTGGATCTCTGTCCCTGGGACACCCATT
TGGAGCCACTGGCTGCAGGTTGGTCATGGCAGCTGCCAACAGATTACGGAAAGAAGGAGGCCAGTATGGCTTAGTGGCTG
CGTGTGCAGCTGGAGGGCAGGGCCATGCTATGATAGTGGAAGCTTATCCAAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 29 .69 RPM
SRP007412_cerebellum 27 .24 RPM
SRP007412_heart 292 .43 RPM
SRP007412_kidney 103 .09 RPM
SRP007412_liver 67 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002288 ortholog_one2many 1 retrogene
retro_amel_1473,
Canis familiaris ENSCAFG00000029395 ortholog_one2many 1 retrogene
retro_cfam_2114,
Choloepus hoffmanni ENSCHOG00000010050 ortholog_one2one 3 retrogenes
retro_chof_122, retro_chof_1869, retro_chof_911,
Homo sapiens ENSG00000138029 ortholog_one2one 1 retrogene
retro_hsap_4778,
Gorilla gorilla ENSGGOG00000025829 ortholog_one2one 1 retrogene
retro_ggor_2976,
Microcebus murinus ENSMICG00000006750 ortholog_one2one 1 retrogene
retro_mmur_1315,
Mus musculus ENSMUSG00000059447 ortholog_one2one 2 retrogenes
retro_mmus_1427, retro_mmus_1961,
Otolemur garnettii ENSOGAG00000005444 ortholog_one2many 1 retrogene
retro_ogar_167,
Pan troglodytes ENSPTRG00000011733 ortholog_one2one 1 retrogene
retro_ptro_3180,
Tarsius syrichta ENSTSYG00000003570 ortholog_one2one 2 retrogenes
retro_tsyr_1316, retro_tsyr_1951,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3718 85.98 100.00
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Download FASTA sequences of all ENSPPYG00000012582 retrocopies