Parental gene:

HADHB, ENSPTRG00000011733

Aliases:None
Description:Pan troglodytes hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit (HADHB), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001034119]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:2A:26602956..26649535(+)


>ENSPTRG00000011733
ATGACTACTATCTTGACTTACCCCTTTAAAAATCTTCCCACTGCATCAAAATGGGCCCTCAGATTTTCCATAAGACCTCT
GAGCTGTTCCTCCCAGCTACGAGCTGCCCCAGCTGTCCAGACCAAAACGAAGAAGACGTTAGCCAAACCCAATATAAGGA
ATGTTGTGGTGGTGGATGGTGTTCGCACTCCATTTTTGCTGTCTGGCACTTCATATAAAGACCTGATGCCACATGATTTG
GCTAGAGCAGCGCTTACGGGTTTGTTGCATCGGACCAGTGTCCCTAAGGAAGTAGTTGATTATATCATCTTTGGTACAGT
TATTCAGGAAGTGAAAACAAGCAATGTGGCTAGAGAGGCTGCCCTTGGAGCTGGCTTCTCTGACAAGACTCCTGCTCACA
CTGTCACCATGGCTTGTATCTCTGCCAACCAAGCCATGACCACAGGTGTTGGCTTGATTGCTTCTGGCCAGTGTGATGTG
ATCGTGGCAGGTGGTGTTGAGTTGATGTCCGATGTCCCTATTCGTCACTCAAGGAAAATGAGAAAACTGATGCTTGATCT
CAATAAGGCCAAATCTATGGGCCAGCGACTGTCTTTAATCTCTAAATTCCGATTTAATTTCCTAGCACCTGAGCTCCCTG
CGGTTTCTGAGTTCTCCACCAGTGAGACCATGGGCCACTCTGCAGACCGACTGGCCGCTGCCTTTGCTGTTTCTCGGCTG
GAACAGGATGAATATGCACTGCGCTCTCACAGTCTAGCCAAGAAGGCACAGGATGAAGGACTCCTTTCTGATGTGGTACC
CTTCAAAGTACCAGGAAAAGATACAGTTACCAAAGATAATGGCATCCGTCCTTCCTCACTGGAGCAGATGGCCAAACTAA
AACCTGCATTCATCAAGCCCTACGGCACAGTGACAGCTGCAAATTCTTCTTTCTTGACTGATGGCGCATCTGCAATGTTA
ATCATGGCGGAGGAAAAGGCTCTGGCCATGGGTTATAAGCCGAAGGCATATTTGAGGGATTTTATGTATGTGTCTCAGGA
TCCAAAAGATCAACTATTACTTGGACCAACATATGCTACTCCAAAAGTTCTAGAAAAGGCAGGATTGACCATGAATGATA
TTGATGCTTTTGAATTTCATGAAGCTTTCTCGGGTCAGATTTTGGCAAATTTTAAAGCCATGGATTCTGATTGGTTTGCA
GAAAACTACATGGGTAGAAAAACCAAGGTTGGATTGCCTCCTTTGGAGAAGTTTAATAACTGGGGTGGATCTCTGTCCCT
GGGACACCCATTTGGAGCCACTGGCTGCAGGTTGGTCATGGCTGCTGCCAACAGATTACGGAAAGAAGGAGGCCAGTATG
GCTTAGTGGCTGCGTGTGCAGCTGGAGGGCAGGGCCATGCTATGATAGTGGAAGCTTATCCAAAGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 50 .60 RPM
SRP007412_cerebellum 49 .36 RPM
SRP007412_heart 544 .95 RPM
SRP007412_kidney 198 .18 RPM
SRP007412_liver 73 .10 RPM
SRP007412_testis 75 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002288 ortholog_one2many 1 retrogene
retro_amel_1473,
Canis familiaris ENSCAFG00000029395 ortholog_one2many 1 retrogene
retro_cfam_2114,
Choloepus hoffmanni ENSCHOG00000010050 ortholog_one2one 3 retrogenes
retro_chof_122, retro_chof_1869, retro_chof_911,
Homo sapiens ENSG00000138029 ortholog_one2one 1 retrogene
retro_hsap_4778,
Gorilla gorilla ENSGGOG00000025829 ortholog_one2one 1 retrogene
retro_ggor_2976,
Microcebus murinus ENSMICG00000006750 ortholog_one2one 1 retrogene
retro_mmur_1315,
Mus musculus ENSMUSG00000059447 ortholog_one2one 2 retrogenes
retro_mmus_1427, retro_mmus_1961,
Otolemur garnettii ENSOGAG00000005444 ortholog_one2many 1 retrogene
retro_ogar_167,
Pongo abelii ENSPPYG00000012582 ortholog_one2one 1 retrogene
retro_pabe_3718,
Tarsius syrichta ENSTSYG00000003570 ortholog_one2one 2 retrogenes
retro_tsyr_1316, retro_tsyr_1951,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_3180 86.67 97.68
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Download FASTA sequences of all ENSPTRG00000011733 retrocopies