RetrogeneDB ID: retro_ogar_167

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873729.1:1204144..1205572(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000027560
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000005444
• Aliases: None
• Description: None

Sequence

>retro_ogar_167
ATGACTACTATCTTGACTTACACTTTAAAAAATCTTCCTAATGCATCAAAATGGACCCTCAGATTACCTGTAAGAAGTCT
GAGCTGTTCCTCCCAGCTTCGAGCTGCCCCAGCTGGCCAGACCAAATCAAAGAAGACCTTAGCCAAACCCAATGTAAGGA
ATATAGTGGTGGTGGACGGTGTCCGGACTCCATTTTTGCTGTCAGGCACTTCGTACAAAGACCTGATGCCACATGATTTG
GCTAGAGCAGCACTAACGGGGCTGTTGAATCAGACCAGTGTCCCAAAGGATATTGTTGATTATATCATCTTTGGCACAGT
TATTCAAGAAGTGAAAACAAGCAACGTAGCTAGAGAGGCTGCCCTCGGAGCTGGCTTCTCTGACAAGACTCCCGCTCACA
CTGTAACCATGGCTTGTATCTCTGCCAACCAAGCCATGACCACAGGTGTTGGCTTGATTGCTTCTGGCCAGTGTGATGTG
ATTGTGGCAGGTGGTGTAGAGTTAATGTCTGATGTCCCTATTCGTCATTCAAGGAAAATGAGGAAAATGATGCTTGATCT
CAATAAGGCCAAGACTCTGGGCCAGCGACTGTCTTTACTCTCTAAATTCAGACTGAATTTTCTCTCACCTGAGCTCCCTG
CAGTGGCTGAGTTCTCTACCAGTGAGACCATGGGCCACTCTGCAGACCGACTGGCTGCTGCCTTCTCTGTTTCTCGCCTG
GAACAGGATGAATATGCACTGCGCTCTCATAGTCTGGCCAAGAAGGCACAGGATGAGGGACTCCTTTCTGATGTTATAGC
TTTCAAAGTGCCAGGAAAAGATACAGTTACGAAAGATAATGGCATCCGTCCTTCCTCACTGGAGCAGATGGCCAAATTAA
AACCTGCATTCATCAAGCCCTATGGCACAGTGACAGCTGCAAATTCTTCTTTCCTGACTGATGGTGCATCTGCAATGCTG
ATTATGGCAGAGGAAAAAGCTCTGGCTATGGGCTATAAACCGAAGGCATATTTGAGGGATTTTGTATATGTATCTCAGGA
TCCAAAAGATCAACTTTTACTTGGACCAACATATGCTACTCCAAAAGTTCTAGAAAAGGCAGGATTAACCATGAATGATA
TTGATGCTTTTGAATTTCATGAAGCTTTCTCAGGTCAAATTTTGGCTAATTTTAAAGCCATGGATTCTGATTGGTTTGCA
CAAAACTACATGGGTAGAAAAACCAAGGTTGGATTGCCTCCGTTGGAGAAGTTCAATAACTGGGGTGGATCTTTGTCCCT
GGGACACCCGTTTGGAGCCACTGGCTGTCGGTTGGTCATGGCAGCTGCCAACAGATTACGGAAGGAAGGAGGCCAGTACG
GCTTAGTGGCTGCCTGTGCAGCCGGAGGGCAGGGCCATGCTATGATAGTGGAGGCGTATCCAAAATAA

Alignment

ORF - retro_ogar_167 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.58 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTTILTYTLKNLPNASKWTLRLPVRSLSCSSQLRAAPAGQTKSKKTLAKPNVRNIVVVDGVRTPFLLSGT
          MTTILTYTLKNLPNASKWTLRLPVRSLSCSSQLRAAPAGQTKSKKTLAKPNVRNIVVVDGVRTPFLLSGT
Retrocopy MTTILTYTLKNLPNASKWTLRLPVRSLSCSSQLRAAPAGQTKSKKTLAKPNVRNIVVVDGVRTPFLLSGT

Parental  SYKDLMPHDLARAALTGLLNQTSVPKDIVDYIIFGTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACI
          SYKDLMPHDLARAALTGLLNQTSVPKDIVDYIIFGTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACI
Retrocopy SYKDLMPHDLARAALTGLLNQTSVPKDIVDYIIFGTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACI

Parental  SANQAMTTGVGLIASGQCDVIVAGGVELMSDVPIRHSRKMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSP
          SANQAMTTGVGLIASGQCDVIVAGGVELMSDVPIRHSRKMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSP
Retrocopy SANQAMTTGVGLIASGQCDVIVAGGVELMSDVPIRHSRKMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSP

Parental  ELPAVAEFSTSETMGHSADRLAAAFAVSRLEQDEYALRSHSLAKKAQDEGLLSDVIAFKVPGKDTVTKDN
          ELPAVAEFSTSETMGHSADRLAAAF.VSRLEQDEYALRSHSLAKKAQDEGLLSDVIAFKVPGKDTVTKDN
Retrocopy ELPAVAEFSTSETMGHSADRLAAAFSVSRLEQDEYALRSHSLAKKAQDEGLLSDVIAFKVPGKDTVTKDN

Parental  GIRPSSLEQMAKLKPAFIKPYGTVTAANSSFLTDGASAMLIMAEEKALALGYKPKAYLRDFVYVSQDPKD
          GIRPSSLEQMAKLKPAFIKPYGTVTAANSSFLTDGASAMLIMAEEKALA.GYKPKAYLRDFVYVSQDPKD
Retrocopy GIRPSSLEQMAKLKPAFIKPYGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFVYVSQDPKD

Parental  QLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANFKAMDSDWFAQNYMGRKTKVGLPPLEKFNN
          QLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANFKAMDSDWFAQNYMGRKTKVGLPPLEKFNN
Retrocopy QLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANFKAMDSDWFAQNYMGRKTKVGLPPLEKFNN

Parental  WGGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAMIVEAYPK
          WGGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAMIVEAYPK
Retrocopy WGGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAMIVEAYPK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_167 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000002288	1 retrocopy	retro_amel_1473,
Canis familiaris	ENSCAFG00000029395	1 retrocopy	retro_cfam_2114,
Choloepus hoffmanni	ENSCHOG00000010050	3 retrocopies	retro_chof_122, retro_chof_1869, retro_chof_911,
Homo sapiens	ENSG00000138029	1 retrocopy	retro_hsap_4778,
Gorilla gorilla	ENSGGOG00000025829	1 retrocopy	retro_ggor_2976,
Microcebus murinus	ENSMICG00000006750	1 retrocopy	retro_mmur_1315,
Mus musculus	ENSMUSG00000059447	2 retrocopies	retro_mmus_1427, retro_mmus_1961,
Otolemur garnettii	ENSOGAG00000005444	1 retrocopy	retro_ogar_167 ,
Pongo abelii	ENSPPYG00000012582	1 retrocopy	retro_pabe_3718,
Pan troglodytes	ENSPTRG00000011733	1 retrocopy	retro_ptro_3180,
Tarsius syrichta	ENSTSYG00000003570	2 retrocopies	retro_tsyr_1316, retro_tsyr_1951,