RetrogeneDB ID: | retro_tsyr_1951 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_71388:5345..6375(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HADHB | ||
Ensembl ID: | ENSTSYG00000003570 | ||
Aliases: | None | ||
Description: | hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit [Source:HGNC Symbol;Acc:4803] |
Percent Identity: | 85.71 % |
Parental protein coverage: | 72.75 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | ILTYSFKNLPSTSKWALIPPHSLRPLSCSSQVRAAPAVQTKSKKTLAKPNIRNIVVVDGVRTP-FLLSGT |
ILTYSFKNLPSTSKWAL....SLRPLSCS.Q.R.APAVQTKSKKTLAKPNIRNIVVVDGVRTP.FLLSG. | |
Retrocopy | ILTYSFKNLPSTSKWAL--KFSLRPLSCSFQLRTAPAVQTKSKKTLAKPNIRNIVVVDGVRTP>FLLSGA |
Parental | SYKDLMPHDLARAALTGLLHRTNVPKEVVDYIIFGTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACI |
S.KDL.P.DLARAALT.LLHRTNVPKEVVDYIIFGTVIQE.K.SNV..EAAL.AGFSDK.PAHTVT.ACI | |
Retrocopy | SDKDLRPRDLARAALTSLLHRTNVPKEVVDYIIFGTVIQEMKASNVV-EAALRAGFSDKIPAHTVTTACI |
Parental | SANQAMTTGVGLLTSGQCDVIVAGGVELMSDVPIRHSRKMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSP |
SANQAMTTGVGL..SGQC.VIVAGGVELMSDVP..HSRK.RKMMLDLNKAKT.GQ.LSLL.KFRLNFLSP | |
Retrocopy | SANQAMTTGVGLIASGQCGVIVAGGVELMSDVPVCHSRKLRKMMLDLNKAKTRGQQLSLLYKFRLNFLSP |
Parental | ELPAVAEFSTSETMGHSADRLAAAFA-VSRLEQDEYALRSHSLAKKAQDEGLLSDVVPFSVPGKDTITKD |
ELP.VAEFSTSETMGHSAD.LA.A...VSRLEQD.YALRSH.L.KKA.DEGLLSDV..FSVP.KDT.TKD | |
Retrocopy | ELPVVAEFSTSETMGHSADQLAIAMP>VSRLEQDDYALRSHNLSKKA*DEGLLSDVL-FSVPEKDTVTKD |
Parental | NGIRPSSLE-QMAKLKPAFIKPYGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFMYVSQDP |
NGIRPSSLE..MAKLK..FIKPYGTVTAAN.SFLTDGASAMLIMAEEKALA..YKPKAYLRDFMYVSQDP | |
Retrocopy | NGIRPSSLE<EMAKLKSMFIKPYGTVTAANPSFLTDGASAMLIMAEEKALATSYKPKAYLRDFMYVSQDP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002288 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000029395 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000010050 | 3 retrocopies | |
Homo sapiens | ENSG00000138029 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025829 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006750 | 1 retrocopy | |
Mus musculus | ENSMUSG00000059447 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005444 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012582 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011733 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000003570 | 2 retrocopies |
retro_tsyr_1316, retro_tsyr_1951 ,
|