Parental gene: | HSPD1, ENSPPYG00000013046 |
| Aliases: | None |
| Description: | 60 kDa heat shock protein, mitochondrial precursor [Source:RefSeq peptide;Acc:NP_001127086] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 2b:88464851..88481124(-) |
>ENSPPYG00000013046
ATGCTTCGGTTACCCACAGTCTTTCGCCAGATGAGACCGGTGTCCAGGGTACTGGCTCCTCATCTCACTCGGGCTTATGC
CAAAGATGTAAAATTTGGTGCAGATGCCCGAGCCTTAATGCTTCAAGGTGTAGACCTTTTAGCCGATGCTGTGGCCGTTA
CAATGGGGCCAAAGGGAAGAACAGTGATTATTGAGCAGAGTTGGGGAAGTCCCAAAGTAACAAAAGATGGTGTGACTGTT
GCAAAGTCAATTGACTTAAAGGATAAATATAAAAACATTGGAGCTAAACTTGTTCAAGATGTTGCCAATAACACAAATGA
AGAAGCTGGGGATGGCACTACCACTGCTACCGTACTGGCACGCTCTATAGCCAAGGAAGGCTTCGAGAAGATTAGCAAAG
GTGCTAATCCAGTGGAAATCAGGAGAGGTGTGATGTTAGCTGTTGATGCTGTAATTGCTGAACTTAAAAAGCAGTCTAAA
CCTGTGACCACCCCTGAAGAAATTGCACAGGTTGCTACGATTTCTGCAAATGGAGACAAAGAAATTGGCAATATCATCTC
TGATGCAATGAAAAAAGTTGGAAGAAAGGGTGTCATCACAGTAAAGGATGGAAAAACACTGAATGATGAATTAGAAATTA
TCGAAGGCATGAAGTTTGATCGAGGCTATATTTCTCCATACTTTATTAATACATCAAAAGGTCAGAAATGTGAATTCCAG
GATGCCTATGTTCTGTTGAGTGAAAAGAAAATCTCTAGTGTCCAGTCCATTGTACCTGCTCTTGAAATTGCCAATGCTCA
CCGTAAGCCTTTGGTCATAATCGCTGAAGATGTTGATGGAGAAGCTCTAAGTACACTCGTCTTGAATAGGCTAAAGGTTG
GTCTTCAGGTTGTGGCAGTCAAGGCTCCAGGCTTTGGTGACAATAGAAAGAACCAGCTTAAAGATATGGCTATTGCTACT
GGTGGTGCAGTGTTTGGAGAAGAGGGGTTGACCCTGAATCTTGAAGACGTTCAGCCTCATGACTTAGGAAAAGTTGGAGA
GGTCATTGTGACCAAAGACGACGCCATGCTCTTAAAAGGAAAAGGTGACAAGGCTCAAATTGAAAAACGTATTCAAGAAA
TCATTGAGCAGTTAGATGTCACAACTAGTGAATATGAAAAGGAAAAACTGAATGAACGGCTTGCAAAACTTTCAGATGGA
GTAGCTGTGCTGAAGGTTGGTGGGACAAGTGATGTTGAAGTGAATGAAAAGAAAGACAGAGTTACAGATGCCCTTAATGC
TACAAGAGCTGCTGTTGAAGAAGGCATTGTTTTGGGAGGGGGTTGCGCCCTGCTTCGATGCATTCCAGCCTTGGACTCAT
TGACTCCAGCTAATGAAGATCAAAAAATTGGTATAGAAATTATTAAAAGAACACTCAAAATTCCAGCAATGACCATTGCT
AAGAATGCAGGTGTTGAAGGATCTTTGATAGTTGAGAAAATTATGCAAAGTTCCTCAGAAGTTGGTTATGATGCTATGGT
TGGAGATTTTGTGAATATGGTGGAAAAAGGAATTATTGACCCAACAAAGGTTGTGAGAACTGCTTTATTGGATGCTGCTG
GTGTGGCCTCTCTGTTAACTACAGCAGAAGTTGTAGTCACAGAAATTCCTAAAGAAGAGAAGGACCCTGGAATGGGTGCA
ATGGGTGGAATGGGAGGTGGTATGGGAGGTGGCATGTTCTAA
ATGCTTCGGTTACCCACAGTCTTTCGCCAGATGAGACCGGTGTCCAGGGTACTGGCTCCTCATCTCACTCGGGCTTATGC
CAAAGATGTAAAATTTGGTGCAGATGCCCGAGCCTTAATGCTTCAAGGTGTAGACCTTTTAGCCGATGCTGTGGCCGTTA
CAATGGGGCCAAAGGGAAGAACAGTGATTATTGAGCAGAGTTGGGGAAGTCCCAAAGTAACAAAAGATGGTGTGACTGTT
GCAAAGTCAATTGACTTAAAGGATAAATATAAAAACATTGGAGCTAAACTTGTTCAAGATGTTGCCAATAACACAAATGA
AGAAGCTGGGGATGGCACTACCACTGCTACCGTACTGGCACGCTCTATAGCCAAGGAAGGCTTCGAGAAGATTAGCAAAG
GTGCTAATCCAGTGGAAATCAGGAGAGGTGTGATGTTAGCTGTTGATGCTGTAATTGCTGAACTTAAAAAGCAGTCTAAA
CCTGTGACCACCCCTGAAGAAATTGCACAGGTTGCTACGATTTCTGCAAATGGAGACAAAGAAATTGGCAATATCATCTC
TGATGCAATGAAAAAAGTTGGAAGAAAGGGTGTCATCACAGTAAAGGATGGAAAAACACTGAATGATGAATTAGAAATTA
TCGAAGGCATGAAGTTTGATCGAGGCTATATTTCTCCATACTTTATTAATACATCAAAAGGTCAGAAATGTGAATTCCAG
GATGCCTATGTTCTGTTGAGTGAAAAGAAAATCTCTAGTGTCCAGTCCATTGTACCTGCTCTTGAAATTGCCAATGCTCA
CCGTAAGCCTTTGGTCATAATCGCTGAAGATGTTGATGGAGAAGCTCTAAGTACACTCGTCTTGAATAGGCTAAAGGTTG
GTCTTCAGGTTGTGGCAGTCAAGGCTCCAGGCTTTGGTGACAATAGAAAGAACCAGCTTAAAGATATGGCTATTGCTACT
GGTGGTGCAGTGTTTGGAGAAGAGGGGTTGACCCTGAATCTTGAAGACGTTCAGCCTCATGACTTAGGAAAAGTTGGAGA
GGTCATTGTGACCAAAGACGACGCCATGCTCTTAAAAGGAAAAGGTGACAAGGCTCAAATTGAAAAACGTATTCAAGAAA
TCATTGAGCAGTTAGATGTCACAACTAGTGAATATGAAAAGGAAAAACTGAATGAACGGCTTGCAAAACTTTCAGATGGA
GTAGCTGTGCTGAAGGTTGGTGGGACAAGTGATGTTGAAGTGAATGAAAAGAAAGACAGAGTTACAGATGCCCTTAATGC
TACAAGAGCTGCTGTTGAAGAAGGCATTGTTTTGGGAGGGGGTTGCGCCCTGCTTCGATGCATTCCAGCCTTGGACTCAT
TGACTCCAGCTAATGAAGATCAAAAAATTGGTATAGAAATTATTAAAAGAACACTCAAAATTCCAGCAATGACCATTGCT
AAGAATGCAGGTGTTGAAGGATCTTTGATAGTTGAGAAAATTATGCAAAGTTCCTCAGAAGTTGGTTATGATGCTATGGT
TGGAGATTTTGTGAATATGGTGGAAAAAGGAATTATTGACCCAACAAAGGTTGTGAGAACTGCTTTATTGGATGCTGCTG
GTGTGGCCTCTCTGTTAACTACAGCAGAAGTTGTAGTCACAGAAATTCCTAAAGAAGAGAAGGACCCTGGAATGGGTGCA
ATGGGTGGAATGGGAGGTGGTATGGGAGGTGGCATGTTCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 98 .36 RPM |
| SRP007412_cerebellum | 94 .97 RPM |
| SRP007412_heart | 108 .97 RPM |
| SRP007412_kidney | 263 .12 RPM |
| SRP007412_liver | 241 .60 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000013770 | possible_ortholog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000010865 | possible_ortholog | 4 retrogenes | |
| Callithrix jacchus | ENSCJAG00000003990 | ortholog_one2one | 6 retrogenes | |
| Echinops telfairi | ENSETEG00000009184 | possible_ortholog | 4 retrogenes | |
| Homo sapiens | ENSG00000144381 | ortholog_one2one | 7 retrogenes | |
| Gorilla gorilla | ENSGGOG00000008267 | ortholog_one2one | 6 retrogenes | |
| Loxodonta africana | ENSLAFG00000000053 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000011987 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000000871 | possible_ortholog | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000010489 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000012289 | ortholog_one2one | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000007818 | possible_ortholog | 3 retrogenes | |
| Mus musculus | ENSMUSG00000025980 | ortholog_one2one | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000006874 | ortholog_one2one | 7 retrogenes | |
| Otolemur garnettii | ENSOGAG00000034053 | possible_ortholog | 5 retrogenes | |
| Rattus norvegicus | ENSRNOG00000014525 | ortholog_one2many | 9 retrogenes | |
| Xenopus tropicalis | ENSXETG00000007509 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_848 | 91.68 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2040 | 95.32 | 96.86 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2244 | 86.42 | 52.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_2476 | 87.84 | 88.48 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_2887 | 78.45 | 51.48 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000013046 retrocopies