RetrogeneDB ID: | retro_hsap_3930 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 8:7276366..7278062(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000255128 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPD1 | ||
Ensembl ID: | ENSG00000144381 | ||
Aliases: | HSPD1, CPN60, GROEL, HLD4, HSP-60, HSP60, HSP65, HuCHA60, SPG13 | ||
Description: | heat shock 60kDa protein 1 (chaperonin) [Source:HGNC Symbol;Acc:5261] |
Percent Identity: | 84.12 % |
Parental protein coverage: | 99.13 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | MLRLPTVFRQMRPVSRVLAPHLTRAYAKDVKFGADARALMLQGVDLLA-DAVAVTMGPKGRTVIIEQSWG |
ML.LPTVF.QMRPVSR.LAPHLT....KDVKFG.D.RALMLQ.VD.L...AVA.TMGPKGRTVIIE.SWG | |
Retrocopy | MLPLPTVFHQMRPVSRLLAPHLT*SDGKDVKFGDDVRALMLQSVDFLS<EAVAITMGPKGRTVIIEHSWG |
Parental | SPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAG-DGTTTATVLARSIAKEGFEKISKGANPV |
SPKVTKDGVT.AKSIDLKDKYK.IGAKLVQDVANNT.EE.G.DGT.TA.VL..SI.K.GF.K.SKGANPV | |
Retrocopy | SPKVTKDGVTDAKSIDLKDKYKSIGAKLVQDVANNTDEETG>DGTITAAVLVCSISK*GFQKVSKGANPV |
Parental | EIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLN |
EI.RGVMLAVDAVIAELKKQSKPVT.PEEIAQVATISANGDKEIGNIISDAMKK.GRKG.ITVKDGKTL. | |
Retrocopy | EIKRGVMLAVDAVIAELKKQSKPVTKPEEIAQVATISANGDKEIGNIISDAMKKFGRKGIITVKDGKTLT |
Parental | DELEIIEGMK-FDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSIQSIVPALEIANAHRKPLVIIAED |
DELEIIEGMK.FDRGYISPYFINTSKG.KCEFQDAYVLL.EKKISS.QSIV.ALEIANA..KPLVIIA.D | |
Retrocopy | DELEIIEGMK>FDRGYISPYFINTSKGEKCEFQDAYVLLHEKKISSVQSIVTALEIANAYCKPLVIIAGD |
Parental | VDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEE-GLTLNLEDVQPHDLGKVG |
.DGEAL.TL.LNRLKVGLQVVAVKAPGFGDNRKNQLKD..IATGG.VFGEE.GLTLNLEDVQP.D.G.VG | |
Retrocopy | IDGEALTTLILNRLKVGLQVVAVKAPGFGDNRKNQLKDTVIATGGTVFGEE<GLTLNLEDVQPRDVGEVG |
Parental | EVIVTKDDAMLLKGKGDKAQIEKRIQEIIEQLDVTTSEYEKEKLN-ERLAKLSDGVAVLKVGGTSDVEVN |
EV.V.KD.AMLLKGKG.K.QIEK..QEII.Q.DVTTSEYEKEK...E.L....DGVAVLKVGGTSDVEVN | |
Retrocopy | EVTVIKDYAMLLKGKGNKSQIEKCVQEIIDQSDVTTSEYEKEKVS>EKLS---DGVAVLKVGGTSDVEVN |
Parental | EKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRTLKIPAMTIAKNAGV |
E.KDRV..ALNATRAAVEEGIV.GGGCALLRCIPALDS.TPANED..IGIEIIKRTLKIPAMTIAKNAGV | |
Retrocopy | EEKDRVIGALNATRAAVEEGIV*GGGCALLRCIPALDSFTPANEDKIIGIEIIKRTLKIPAMTIAKNAGV |
Parental | EGSLIVEKIMQSSSEVGYDAMAGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEEKD |
.G.LIVEKIM.SSSEVGYD.M.GD.VNMVEK.IIDPTKVVRTA.LDAAG.ASLLTTA.VVVTEIPKE... | |
Retrocopy | DGFLIVEKIM*SSSEVGYDTMLGDVVNMVEKDIIDPTKVVRTASLDAAGMASLLTTAAVVVTEIPKEGNS |
Parental | PGMGAMGGMGGGM |
PGMGAM.GMGGG. | |
Retrocopy | PGMGAMCGMGGGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 169 .50 RPM |
bodymap2_adrenal | 0 .00 RPM | 142 .79 RPM |
bodymap2_brain | 0 .00 RPM | 143 .10 RPM |
bodymap2_breast | 0 .00 RPM | 184 .30 RPM |
bodymap2_colon | 0 .00 RPM | 473 .77 RPM |
bodymap2_heart | 0 .00 RPM | 84 .42 RPM |
bodymap2_kidney | 0 .00 RPM | 383 .99 RPM |
bodymap2_liver | 0 .00 RPM | 451 .41 RPM |
bodymap2_lung | 0 .00 RPM | 244 .20 RPM |
bodymap2_lymph_node | 0 .00 RPM | 301 .77 RPM |
bodymap2_ovary | 0 .00 RPM | 367 .40 RPM |
bodymap2_prostate | 0 .00 RPM | 232 .90 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 104 .58 RPM |
bodymap2_testis | 0 .00 RPM | 196 .47 RPM |
bodymap2_thyroid | 0 .00 RPM | 841 .36 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 121 .49 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |