Parental gene:

NDUFA5, ENSPPYG00000017956

Aliases:None
Description:NADH dehydrogenase [Source:RefSeq peptide;Acc:NP_001125332]
Organism:Orangutan (Pongo abelii)
Coordinates:7:120311863..120328933(-)


>ENSPPYG00000017956
ATGGCGGGTGTGCTGAAGAAGACCACTGGCCTTGTGGGATTGGCTGTCTGCAATACTCCTCACGAGAGGCTAAGAATATT
GTACACAAAGATTCTTGATGTTCTTGAGGAAATCCCTAAAAATGCAGCATATAGAAAGTATACAGAACAGATTACAAATG
AGAAGCTGGCTATGGTTAAAGCGGAACCAGATGTTAAAAAATTAGAAGACCAACTTCAAGGCGGTCAATTAGAAGAGGTG
ATTCTTCAGGCTGAACATGAACTAAATCTGGCAAGAAAAATGAAGGAATGGAAACTATGGGAGCCATTAGTGGAAGAGCC
TCCTGCCGATCAGTGGAAATGGCCAATATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 36 .16 RPM
SRP007412_cerebellum 33 .56 RPM
SRP007412_heart 40 .43 RPM
SRP007412_kidney 30 .40 RPM
SRP007412_liver 10 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004512 ortholog_one2one 2 retrogenes
retro_amel_1543, retro_amel_695,
Bos taurus ENSBTAG00000009334 ortholog_one2one 5 retrogenes
retro_btau_1258, retro_btau_1613, retro_btau_537, retro_btau_808, retro_btau_950,
Canis familiaris ENSCAFG00000025112 ortholog_one2many 4 retrogenes
retro_cfam_302, retro_cfam_445, retro_cfam_882, retro_cfam_921,
Callithrix jacchus ENSCJAG00000017449 ortholog_one2many 1 retrogene
retro_cjac_65,
Felis catus ENSFCAG00000027125 ortholog_one2one 5 retrogenes
retro_fcat_1081, retro_fcat_1278, retro_fcat_244, retro_fcat_550, retro_fcat_799,
Homo sapiens ENSG00000128609 ortholog_one2one 10 retrogenes
retro_hsap_1065, retro_hsap_1687, retro_hsap_2671, retro_hsap_3218, retro_hsap_3627, retro_hsap_3950, retro_hsap_3997, retro_hsap_4248, retro_hsap_745, retro_hsap_746,
Gorilla gorilla ENSGGOG00000022922 ortholog_one2one 9 retrogenes
retro_ggor_1264, retro_ggor_1864, retro_ggor_2185, retro_ggor_2447, retro_ggor_2654, retro_ggor_2683, retro_ggor_2848, retro_ggor_624, retro_ggor_840,
Loxodonta africana ENSLAFG00000030971 ortholog_one2one 1 retrogene
retro_lafr_275,
Monodelphis domestica ENSMODG00000015384 ortholog_one2one 4 retrogenes
retro_mdom_1292, retro_mdom_1429, retro_mdom_1804, retro_mdom_525,
Mustela putorius furo ENSMPUG00000006811 ortholog_one2one 4 retrogenes
retro_mputfur_1151, retro_mputfur_1353, retro_mputfur_683, retro_mputfur_939,
Mus musculus ENSMUSG00000023089 ortholog_one2one 2 retrogenes
retro_mmus_2951, retro_mmus_853,
Otolemur garnettii ENSOGAG00000033137 ortholog_one2one 6 retrogenes
retro_ogar_1346, retro_ogar_1504, retro_ogar_1791, retro_ogar_2047, retro_ogar_2676, retro_ogar_649,
Pan troglodytes ENSPTRG00000019637 ortholog_one2one 10 retrogenes
retro_ptro_1141, retro_ptro_1800, retro_ptro_2235, retro_ptro_2452, retro_ptro_2682, retro_ptro_2714, retro_ptro_2888, retro_ptro_2937, retro_ptro_529, retro_ptro_725,
Rattus norvegicus ENSRNOG00000005698 ortholog_one2one 3 retrogenes
retro_rnor_1041, retro_rnor_2154, retro_rnor_2290,
Sus scrofa ENSSSCG00000016607 ortholog_one2one 2 retrogenes
retro_sscr_1029, retro_sscr_693,
Ictidomys tridecemlineatus ENSSTOG00000027404 ortholog_one2one 1 retrogene
retro_itri_911,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_887 67.71 81.90
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2. retro_pabe_1389 93.97 100.00
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3. retro_pabe_2216 66.18 57.76
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4. retro_pabe_2666 67.65 86.21
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5. retro_pabe_2794 96.40 95.69
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6. retro_pabe_2795 94.83 100.00
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7. retro_pabe_2975 78.07 98.28
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8. retro_pabe_3283 76.85 92.24
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9. retro_pabe_3390 72.63 81.90
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10. retro_pabe_3728 93.81 97.41
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Download FASTA sequences of all ENSPPYG00000017956 retrocopies