Parental gene: | LYPLA1, ENSPPYG00000018590 |
| Aliases: | None |
| Description: | acyl-protein thioesterase 1 [Source:RefSeq peptide;Acc:NP_001125450] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 8:55751208..55808085(-) |
>ENSPPYG00000018590
ATGTGCGGCAATAACATGTCAACCCCGCTGCCCGCCATCGTGCCCGCCGCCCGGAAGGCCACCGCTGCGGTGATTTTCCT
GCATGGATTGGGAGATACTGGGGGGCATGGAAAGCAGAGTTTTTTTATGCTTTGTTATTCTGATTTTGTTGTTTTTTCTT
TTCCATGTAGGCCTGTTAGGCCTGTTACATTAAATATGAACATGGCTATGCCTTCATGGTTTGATATTATTGGGCTTTCA
CCAGATTCACAGGAGGATGAATCTGGGATTAAACAGGCAGCAGAAAATATAAAAGCTTTGATTGATCAAGAAGTGAAGAA
TGGCATTCCTTCTAACAGAATTATTTTGGGAGGGTTTTCTCAGGGAGGAGCTTTATCTTTATATACTGCCCTTACCACGC
AGCAGAAACTGGCAGGTGTCACTGCACTCAGTTGCTGGCTTCCACTTCGGGCTTCCTTTCCACAGGGTCCTATCGGTGGT
GCTAATAGAGATATTTCTATCCTCCAGTGCCACGGGGATTGTGACCCTTTAGTTCCCCTGATGTTTGGTTCTCTTACGGT
TGAAAAACTAAAAACATTGGTGAATCCAGCCAATGTGACCTTTAAAACCTATGAAGGTATGATGCACAGTTCGTGTCAAC
AGGAAATGATGGATGTCAAGCAATTCATTGATAAACTCCTACCTCCAATTGATTGA
ATGTGCGGCAATAACATGTCAACCCCGCTGCCCGCCATCGTGCCCGCCGCCCGGAAGGCCACCGCTGCGGTGATTTTCCT
GCATGGATTGGGAGATACTGGGGGGCATGGAAAGCAGAGTTTTTTTATGCTTTGTTATTCTGATTTTGTTGTTTTTTCTT
TTCCATGTAGGCCTGTTAGGCCTGTTACATTAAATATGAACATGGCTATGCCTTCATGGTTTGATATTATTGGGCTTTCA
CCAGATTCACAGGAGGATGAATCTGGGATTAAACAGGCAGCAGAAAATATAAAAGCTTTGATTGATCAAGAAGTGAAGAA
TGGCATTCCTTCTAACAGAATTATTTTGGGAGGGTTTTCTCAGGGAGGAGCTTTATCTTTATATACTGCCCTTACCACGC
AGCAGAAACTGGCAGGTGTCACTGCACTCAGTTGCTGGCTTCCACTTCGGGCTTCCTTTCCACAGGGTCCTATCGGTGGT
GCTAATAGAGATATTTCTATCCTCCAGTGCCACGGGGATTGTGACCCTTTAGTTCCCCTGATGTTTGGTTCTCTTACGGT
TGAAAAACTAAAAACATTGGTGAATCCAGCCAATGTGACCTTTAAAACCTATGAAGGTATGATGCACAGTTCGTGTCAAC
AGGAAATGATGGATGTCAAGCAATTCATTGATAAACTCCTACCTCCAATTGATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 3 .10 RPM |
| SRP007412_cerebellum | 10 .70 RPM |
| SRP007412_heart | 11 .47 RPM |
| SRP007412_kidney | 14 .09 RPM |
| SRP007412_liver | 12 .42 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000006978 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000011562 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000022715 | ortholog_one2one | 3 retrogenes | |
| Dipodomys ordii | ENSDORG00000001479 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000016530 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000001727 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000008208 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000013157 | possible_ortholog | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000001027 | possible_ortholog | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000006751 | ortholog_one2many | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000001733 | within_species_paralog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000005246 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000008320 | possible_ortholog | 3 retrogenes | |
| Tarsius syrichta | ENSTSYG00000012350 | ortholog_one2one | 6 retrogenes | |
| Tursiops truncatus | ENSTTRG00000011836 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_2550 | 81.03 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_3177 | 67.76 | 76.62 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3565 | 69.53 | 55.41 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000018590 retrocopies