Parental gene:

LYPLA1, ENSPPYG00000018590

Aliases:None
Description:acyl-protein thioesterase 1 [Source:RefSeq peptide;Acc:NP_001125450]
Organism:Orangutan (Pongo abelii)
Coordinates:8:55751208..55808085(-)


>ENSPPYG00000018590
ATGTGCGGCAATAACATGTCAACCCCGCTGCCCGCCATCGTGCCCGCCGCCCGGAAGGCCACCGCTGCGGTGATTTTCCT
GCATGGATTGGGAGATACTGGGGGGCATGGAAAGCAGAGTTTTTTTATGCTTTGTTATTCTGATTTTGTTGTTTTTTCTT
TTCCATGTAGGCCTGTTAGGCCTGTTACATTAAATATGAACATGGCTATGCCTTCATGGTTTGATATTATTGGGCTTTCA
CCAGATTCACAGGAGGATGAATCTGGGATTAAACAGGCAGCAGAAAATATAAAAGCTTTGATTGATCAAGAAGTGAAGAA
TGGCATTCCTTCTAACAGAATTATTTTGGGAGGGTTTTCTCAGGGAGGAGCTTTATCTTTATATACTGCCCTTACCACGC
AGCAGAAACTGGCAGGTGTCACTGCACTCAGTTGCTGGCTTCCACTTCGGGCTTCCTTTCCACAGGGTCCTATCGGTGGT
GCTAATAGAGATATTTCTATCCTCCAGTGCCACGGGGATTGTGACCCTTTAGTTCCCCTGATGTTTGGTTCTCTTACGGT
TGAAAAACTAAAAACATTGGTGAATCCAGCCAATGTGACCTTTAAAACCTATGAAGGTATGATGCACAGTTCGTGTCAAC
AGGAAATGATGGATGTCAAGCAATTCATTGATAAACTCCTACCTCCAATTGATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 3 .10 RPM
SRP007412_cerebellum 10 .70 RPM
SRP007412_heart 11 .47 RPM
SRP007412_kidney 14 .09 RPM
SRP007412_liver 12 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000006978 ortholog_one2one 1 retrogene
retro_cfam_523,
Callithrix jacchus ENSCJAG00000011562 ortholog_one2one 2 retrogenes
retro_cjac_1260, retro_cjac_3100,
Cavia porcellus ENSCPOG00000022715 ortholog_one2one 3 retrogenes
retro_cpor_142, retro_cpor_549, retro_cpor_782,
Dipodomys ordii ENSDORG00000001479 ortholog_one2one 1 retrogene
retro_dord_88,
Equus caballus ENSECAG00000016530 ortholog_one2one 1 retrogene
retro_ecab_238,
Echinops telfairi ENSETEG00000001727 ortholog_one2one 2 retrogenes
retro_etel_612, retro_etel_791,
Myotis lucifugus ENSMLUG00000008208 ortholog_one2many 1 retrogene
retro_mluc_1683,
Macaca mulatta ENSMMUG00000013157 possible_ortholog 3 retrogenes
retro_mmul_1734, retro_mmul_2459, retro_mmul_2474,
Nomascus leucogenys ENSNLEG00000001027 possible_ortholog 4 retrogenes
retro_nleu_1137, retro_nleu_2015, retro_nleu_2817, retro_nleu_2869,
Oryctolagus cuniculus ENSOCUG00000006751 ortholog_one2many 3 retrogenes
retro_ocun_1510, retro_ocun_1623, retro_ocun_1679,
Pongo abelii ENSPPYG00000001733 within_species_paralog 1 retrogene
retro_pabe_142,
Pteropus vampyrus ENSPVAG00000005246 ortholog_one2one 2 retrogenes
retro_pvam_224, retro_pvam_838,
Rattus norvegicus ENSRNOG00000008320 possible_ortholog 3 retrogenes
retro_rnor_1747, retro_rnor_2612, retro_rnor_406,
Tarsius syrichta ENSTSYG00000012350 ortholog_one2one 6 retrogenes
retro_tsyr_1287, retro_tsyr_1303, retro_tsyr_1465, retro_tsyr_1901, retro_tsyr_1996, retro_tsyr_2158,
Tursiops truncatus ENSTTRG00000011836 ortholog_one2one 3 retrogenes
retro_ttru_1643, retro_ttru_169, retro_ttru_291,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2550 81.03 100.00
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2. retro_pabe_3177 67.76 76.62
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3. retro_pabe_3565 69.53 55.41
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Download FASTA sequences of all ENSPPYG00000018590 retrocopies