Parental gene:

IGBP1, ENSPPYG00000020435

Aliases:None
Description:immunoglobulin (CD79A) binding protein 1 [Source:HGNC Symbol;Acc:5461]
Organism:Orangutan (Pongo abelii)
Coordinates:X:67776934..67809760(+)


>ENSPPYG00000020435
ATGGCTGCTGAGGACGAGTTACAGCTGCCGCGGCTCCCCGAGCTGTTCGAAACCGGTAAACAGTTACTGGACGAAGTAGA
AGTAGCGACTGAACCCGCCGGTTCCCGGATAGTCCAGGAGAAGGTGTTCAAGGGCCTGGACCTCCTTGAGAAGGCTGCCG
AAATGTTATCGCAGCTCGACTTGTTCAGCCGAAATGAAGATTTGGAAGAGATTGCTTCCACCGACCTGAAGTACCTTTTG
GTGCCAGCGTTTCAAGGAGCCCTCACCATGAAACAAGTCAACCCCAGCAAGCGTCTAGATCATTTGCAACGGGCTCGAGA
ACACTTTATAAACTACTTAACCCAGTGCCATTGCTATCATGTGGCGGAGTTTGAGCTGCCCACAACCATGAACAACTCTG
CTGAAAATCACACTGCCAATTCCTCCATGGCTTATCCTAGCCTCGTTGCTATGGCATCTCAAAGACAGGCTAAAATACAG
AGATACAAGCAGAAGAAGGAGTTGGAGCATAGGTTGTCTGCAATGAAATCTGCTGTGGAAAGTGGTCAAGCAGATGATGA
GCGTGTTCGTGAATATTATCTTCTTCACCTTCAGAGGTGGATTGATACCAGCTTAGAAGAGATTGAGAGCATTGACCAGG
AAATAAAGATCCTGAGAGAAAGAGACTCTTCAAGAGAGGCATCAACTTCTAACTCATCTCGCCAGGAGAGGCCTCCAGTG
AAACCCTTCATTCTCACTCGGAACACGGCCCAAGCCAAAGTATTTGGAGCTGGTTATCCAAGTCTGGCAACTATGACGGT
GAGTGACTGGTATGAGCAACATCGGAAATATGGAGCATTACCGGATCAGGGAATAGCCAAGGCAGCACCAGAGGAATTCA
GAAAAGCAGCTCAGCAACAGGAAGAACAAGAAGAAAAGGAGGAAGAGGATGATGAACAAACACTCCACAGAGCCCGGGAG
TGGGATGACTGGAAGGACACCCATCCTAGGGGCTATGGCAACCGACAGAACATGGGCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 44 .51 RPM
SRP007412_cerebellum 40 .86 RPM
SRP007412_heart 27 .73 RPM
SRP007412_kidney 55 .92 RPM
SRP007412_liver 24 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007797 ortholog_one2many 1 retrogene
retro_btau_215,
Choloepus hoffmanni ENSCHOG00000013654 ortholog_one2one 3 retrogenes
retro_chof_1523, retro_chof_2206, retro_chof_438,
Callithrix jacchus ENSCJAG00000012525 ortholog_one2many 6 retrogenes
retro_cjac_111, retro_cjac_1225, retro_cjac_2278, retro_cjac_2968, retro_cjac_3417, retro_cjac_47,
Cavia porcellus ENSCPOG00000010797 ortholog_one2many 1 retrogene
retro_cpor_44,
Dasypus novemcinctus ENSDNOG00000014731 ortholog_one2one 5 retrogenes
retro_dnov_1160, retro_dnov_2029, retro_dnov_2340, retro_dnov_2380, retro_dnov_678,
Echinops telfairi ENSETEG00000003397 ortholog_one2one 1 retrogene
retro_etel_1637,
Felis catus ENSFCAG00000029688 ortholog_one2many 1 retrogene
retro_fcat_23,
Homo sapiens ENSG00000089289 ortholog_one2one 5 retrogenes
retro_hsap_1317, retro_hsap_1848, retro_hsap_2766, retro_hsap_2919, retro_hsap_3059,
Gorilla gorilla ENSGGOG00000027795 ortholog_one2one 2 retrogenes
retro_ggor_112, retro_ggor_2020,
Myotis lucifugus ENSMLUG00000004179 ortholog_one2many 1 retrogene
retro_mluc_316,
Macaca mulatta ENSMMUG00000013929 ortholog_one2one 2 retrogenes
retro_mmul_1545, retro_mmul_31,
Mus musculus ENSMUSG00000031221 ortholog_one2one 1 retrogene
retro_mmus_169,
Nomascus leucogenys ENSNLEG00000000747 ortholog_one2one 5 retrogenes
retro_nleu_1399, retro_nleu_1653, retro_nleu_2334, retro_nleu_671, retro_nleu_828,
Otolemur garnettii ENSOGAG00000011797 ortholog_one2many 1 retrogene
retro_ogar_110,
Pan troglodytes ENSPTRG00000021990 ortholog_one2one 5 retrogenes
retro_ptro_1233, retro_ptro_1873, retro_ptro_1973, retro_ptro_1982, retro_ptro_901,
Pteropus vampyrus ENSPVAG00000005483 ortholog_one2one 1 retrogene
retro_pvam_1462,
Rattus norvegicus ENSRNOG00000026267 ortholog_one2one 1 retrogene
retro_rnor_311,
Tarsius syrichta ENSTSYG00000006214 ortholog_one2one 2 retrogenes
retro_tsyr_1537, retro_tsyr_2131,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1099 89.73 66.08
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2. retro_pabe_1451 86.43 99.71
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3. retro_pabe_2245 82.74 57.52
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4. retro_pabe_2533 87.46 86.73
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Download FASTA sequences of all ENSPPYG00000020435 retrocopies