RetrogeneDB ID: | retro_cjac_47 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | GL285106.1:21640..22657(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000022806 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000012525 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.53 % |
Parental protein coverage: | 99.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AAEDELLLPR-LPELFESSKQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLKQLDLFSRNEDLEE |
AAEDE.L.P..LPELF.S.KQLLD.V..A.EP.GS.I.QEKV.KG.DL.EKAA.ML.QLDLFSRNEDLEE | |
Retrocopy | AAEDEFLPPLWLPELFDSGKQLLDKVKGAAEPTGSGIIQEKVSKGFDLHEKAAKMLSQLDLFSRNEDLEE |
Parental | IASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQQAREHFINYLTECRCHHVAEFELPKTKDNSAENHTAN |
I.STDLKYL.VPAFQGALTMKQVNPSKRLDHLQQAR.HFINYLT.C...HVAEFELPKTK.NS.ENHTA. | |
Retrocopy | ITSTDLKYLMVPAFQGALTMKQVNPSKRLDHLQQARKHFINYLTQCHYYHVAEFELPKTKNNSGENHTAI |
Parental | SSMAYPSLVAMASQRQAKIERYKQKKELEHRLSTMKSAVESGQADDERVREYYLLHLQRWIDISLEEIES |
.SMAY.S.VAMASQRQAKIERYK.KKELEHRLSTMKS.VESGQADDERV.EYYLLHL.RWIDISLEEIES | |
Retrocopy | TSMAYSSPVAMASQRQAKIERYK-KKELEHRLSTMKSEVESGQADDERVHEYYLLHLRRWIDISLEEIES |
Parental | IDQEIKILRERGSSREASTSNASRLERPPMKPFILTRNTAQAKVFGAGYPSLATMTVSDWYEQHRKHGAL |
IDQEI.IL.E..SSREASTSN.SR.ERPP.KPFILTR..AQAK.FG.GYPSLA..T.SDWY.QH.KHGAL | |
Retrocopy | IDQEIEILGEKDSSREASTSNSSRQERPPVKPFILTRHMAQAKEFGTGYPSLASVTASDWYDQHWKHGAL |
Parental | PDQGIAKETPEEFRKAAQQQENQEKKEEDDDEQTLYRAREWDDWKDTHPRGYGNRQNMG |
P.QGIAK.TPEEF.KA.QQ...QE.KE..DD.QTL...REWDDWKD.HPRGYGNRQNMG | |
Retrocopy | PNQGIAKATPEEFGKATQQRKDQE-KEKEDDKQTLQGGREWDDWKDAHPRGYGNRQNMG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 8 .25 RPM |
SRP051959_heart | 0 .00 RPM | 11 .02 RPM |
SRP051959_kidney | 0 .00 RPM | 12 .87 RPM |
SRP051959_liver | 0 .00 RPM | 10 .38 RPM |
SRP051959_lung | 0 .00 RPM | 11 .39 RPM |
SRP051959_lymph_node | 0 .00 RPM | 10 .09 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 11 .71 RPM |
SRP051959_spleen | 0 .00 RPM | 12 .92 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1848 |
Pan troglodytes | retro_ptro_1233 |
Gorilla gorilla | retro_ggor_112 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007797 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013654 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000012525 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000010797 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014731 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000003397 | 1 retrocopy | |
Felis catus | ENSFCAG00000029688 | 1 retrocopy | |
Homo sapiens | ENSG00000089289 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000027795 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000004179 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013929 | 2 retrocopies | |
Mus musculus | ENSMUSG00000031221 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000747 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000011797 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020435 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000021990 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000005483 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026267 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006214 | 2 retrocopies |