Parental gene:

IGBP1, ENSPTRG00000021990

Aliases:None
Description:immunoglobulin (CD79A) binding protein 1 [Source:HGNC Symbol;Acc:5461]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:X:69843935..69873144(+)


>ENSPTRG00000021990
ATGGCTGCTGAGGACGAGTTACAGCTGCCGCGGCTCCCCGAGCTGTTCGAAACTGGTAAACAGTTACTGGACGAAGTAGA
TGAAGATTTGGAAGAGATTGCTTCCACGACCCTGAAGTACCTTTTGGTGCCAGCGTTTCAAGGAGCCCTCACCATGAAAC
AAGTCAACCCCAGCAAGCGTCTAGATCATTTGCAGCGGGCTCGAGAACACTTTATAAACTACTTAACTCAGTGCCATTGC
TATCATGTGGCAGAGTTTGAGCTGCCCAAAACCATGAACAACTCTGCTGAAAATCACACTGCCAATTCCTCCATGGCTTA
TCCTAGTCTCGTTGCTATGGCATCTCAAAGACAGGCTAAAATACAGAGATACAAGCAGAAGAAGGAGTTGGAGCATAGGT
TGTCTGCAATGAAATCTGCTGTGGAAAGTGGTCAAGCAGATGATGAGCGTGTTCGTGAATATTATCTTCTTCACCTTCAG
AGGTGGATTGATATCAGCTTAGAAGAGATTGAGAGCATTGACCAGGAAATAAAGATCCTGAGAGAAAGAGACTCTTCAAG
AGAGGCATCAACTTCTAACTCATCTCGCCAGGAGAGGCCTCCAGTGAAACCCTTCATTCTCACTCGGAACACGGCCCAAG
CCGAATTCAGAAAAGCAGCTCAGCAACAGGAAGAACAAGAAGAAAAGGAGGAAGAGGATGATGAACAAACACTCCACAGA
GCCCGGGAGTGGGATGACTGGAAGGACACCCATCCTAGGGGCTATGGCAACCGACAGAACATGGGCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 19 .05 RPM
SRP007412_cerebellum 26 .28 RPM
SRP007412_heart 17 .72 RPM
SRP007412_kidney 24 .63 RPM
SRP007412_liver 9 .20 RPM
SRP007412_testis 19 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007797 ortholog_one2many 1 retrogene
retro_btau_215,
Choloepus hoffmanni ENSCHOG00000013654 ortholog_one2one 3 retrogenes
retro_chof_1523, retro_chof_2206, retro_chof_438,
Callithrix jacchus ENSCJAG00000012525 ortholog_one2many 6 retrogenes
retro_cjac_111, retro_cjac_1225, retro_cjac_2278, retro_cjac_2968, retro_cjac_3417, retro_cjac_47,
Cavia porcellus ENSCPOG00000010797 ortholog_one2many 1 retrogene
retro_cpor_44,
Dasypus novemcinctus ENSDNOG00000014731 ortholog_one2one 5 retrogenes
retro_dnov_1160, retro_dnov_2029, retro_dnov_2340, retro_dnov_2380, retro_dnov_678,
Echinops telfairi ENSETEG00000003397 ortholog_one2one 1 retrogene
retro_etel_1637,
Felis catus ENSFCAG00000029688 ortholog_one2many 1 retrogene
retro_fcat_23,
Homo sapiens ENSG00000089289 ortholog_one2one 5 retrogenes
retro_hsap_1317, retro_hsap_1848, retro_hsap_2766, retro_hsap_2919, retro_hsap_3059,
Gorilla gorilla ENSGGOG00000027795 ortholog_one2one 2 retrogenes
retro_ggor_112, retro_ggor_2020,
Myotis lucifugus ENSMLUG00000004179 ortholog_one2many 1 retrogene
retro_mluc_316,
Macaca mulatta ENSMMUG00000013929 ortholog_one2one 2 retrogenes
retro_mmul_1545, retro_mmul_31,
Mus musculus ENSMUSG00000031221 ortholog_one2one 1 retrogene
retro_mmus_169,
Nomascus leucogenys ENSNLEG00000000747 ortholog_one2one 5 retrogenes
retro_nleu_1399, retro_nleu_1653, retro_nleu_2334, retro_nleu_671, retro_nleu_828,
Otolemur garnettii ENSOGAG00000011797 ortholog_one2many 1 retrogene
retro_ogar_110,
Pongo abelii ENSPPYG00000020435 ortholog_one2one 4 retrogenes
retro_pabe_1099, retro_pabe_1451, retro_pabe_2245, retro_pabe_2533,
Pteropus vampyrus ENSPVAG00000005483 ortholog_one2one 1 retrogene
retro_pvam_1462,
Rattus norvegicus ENSRNOG00000026267 ortholog_one2one 1 retrogene
retro_rnor_311,
Tarsius syrichta ENSTSYG00000006214 ortholog_one2one 2 retrogenes
retro_tsyr_1537, retro_tsyr_2131,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_901 88.49 52.67
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2. retro_ptro_1233 85.71 72.14
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3. retro_ptro_1873 80.12 61.07
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4. retro_ptro_1973 77.65 64.50
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5. retro_ptro_1982 84.74 72.14
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Download FASTA sequences of all ENSPTRG00000021990 retrocopies