Parental gene: | PTGES3, ENSPTRG00000005108 |
| Aliases: | None |
| Description: | Pan troglodytes prostaglandin E synthase 3 (cytosolic) (PTGES3), mRNA. [Source:RefSeq mRNA;Acc:NM_001246402] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 12:32657070..32683066(+) |
>ENSPTRG00000005108
ATGCAGCCTGCTTCTGCAAAGTGGTACGATCGAAGGGACTATGTCTTCATTGAATTTTGTGTTGAAGACAGTAAGGATGT
TAATGTAAATTTTGAAAAATCCAAACTTACATTCAGTTGTCTCGGAGGAAGTGATAATTTTAAGCATTTAAATGAAATTG
ATCTTTTTCACTGTATTGATCCAAATGATTCCAAGCATAAAAGAACGGACAGATCAATTTTATGTTGTTTACGAAAAGGA
GAATCTGGCCAGTCATGGCCAAGGTTAACAAAAGAAAGGGCAAAGCTTAATTGGCTTAGTGTCGACTTCAATAATTGGAA
AGACTGGGAAGATGATTCAGATGAAGACATGTCTAATTTTGATCGTTTCTCTGAGATGATGAACAACATGGGTGGTGATG
AGGATGTAGATTTACCAGAAGTAGATGGAGCAGATGATGATTCACAAGACAGTGATGATGAAAAAATGCCAGATCTGGAG
TAA
ATGCAGCCTGCTTCTGCAAAGTGGTACGATCGAAGGGACTATGTCTTCATTGAATTTTGTGTTGAAGACAGTAAGGATGT
TAATGTAAATTTTGAAAAATCCAAACTTACATTCAGTTGTCTCGGAGGAAGTGATAATTTTAAGCATTTAAATGAAATTG
ATCTTTTTCACTGTATTGATCCAAATGATTCCAAGCATAAAAGAACGGACAGATCAATTTTATGTTGTTTACGAAAAGGA
GAATCTGGCCAGTCATGGCCAAGGTTAACAAAAGAAAGGGCAAAGCTTAATTGGCTTAGTGTCGACTTCAATAATTGGAA
AGACTGGGAAGATGATTCAGATGAAGACATGTCTAATTTTGATCGTTTCTCTGAGATGATGAACAACATGGGTGGTGATG
AGGATGTAGATTTACCAGAAGTAGATGGAGCAGATGATGATTCACAAGACAGTGATGATGAAAAAATGCCAGATCTGGAG
TAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 63 .33 RPM |
| SRP007412_cerebellum | 20 .86 RPM |
| SRP007412_heart | 21 .66 RPM |
| SRP007412_kidney | 37 .19 RPM |
| SRP007412_liver | 18 .53 RPM |
| SRP007412_testis | 60 .60 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000004172 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000017967 | ortholog_one2one | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000006514 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000010724 | ortholog_one2one | 6 retrogenes | |
| Cavia porcellus | ENSCPOG00000000057 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000011310 | ortholog_one2one | 4 retrogenes | |
| Dipodomys ordii | ENSDORG00000000964 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000000024 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000110958 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000027957 | ortholog_one2one | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000008268 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000001288 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000015927 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000013766 | ortholog_one2one | 6 retrogenes | |
| Mus musculus | ENSMUSG00000071072 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000017454 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000028667 | ortholog_one2one | 3 retrogenes | |
| Procavia capensis | ENSPCAG00000007779 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000004669 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000009230 | within_species_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000002642 | ortholog_one2many | 5 retrogenes | |
| Sorex araneus | ENSSARG00000007751 | ortholog_one2one | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000002994 | ortholog_one2one | 15 retrogenes | |
| Tarsius syrichta | ENSTSYG00000009622 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_319 | 96.88 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_452 | 79.34 | 75.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_454 | 60.71 | 51.88 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_609 | 76.47 | 94.38 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_1533 | 84.47 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_1945 | 99.38 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_2111 | 91.25 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ptro_2926 | 56.04 | 56.88 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000005108 retrocopies