RetrogeneDB ID: | retro_cjac_1001 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 12:90236241..90236564(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTGES3 | ||
Ensembl ID: | ENSCJAG00000010724 | ||
Aliases: | None | ||
Description: | prostaglandin E synthase 3 (cytosolic) [Source:HGNC Symbol;Acc:16049] |
Percent Identity: | 71.68 % |
Parental protein coverage: | 70. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | HLNEIDLFHCIDPNDSKHKRTDRSILC-CLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDM |
H....DLF..I.PND.K.K..DR.IL..CL.KG.SGQSWP.LTKERA.LNWLSVDF..WKDWED.SDE.M | |
Retrocopy | HFKHFDLFRSIEPNDIKRKPMDRWILV<CLQKGKSGQSWPTLTKERANLNWLSVDFSHWKDWEDYSDEAM |
Parental | SNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE |
S.FDRFSE..N.MGG.EDVDLPE..GADD.SQ.SDDEK.PDLE | |
Retrocopy | SDFDRFSE--NHMGGEEDVDLPE--GADDHSQYSDDEKIPDLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 57 .13 RPM |
SRP051959_heart | 0 .02 RPM | 52 .73 RPM |
SRP051959_kidney | 0 .00 RPM | 56 .75 RPM |
SRP051959_liver | 0 .00 RPM | 54 .30 RPM |
SRP051959_lung | 0 .00 RPM | 56 .77 RPM |
SRP051959_lymph_node | 0 .00 RPM | 57 .97 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 53 .13 RPM |
SRP051959_spleen | 0 .02 RPM | 59 .33 RPM |