Parental gene:

RPL13, ENSPTRG00000008480

Aliases:None
Description:ribosomal protein L13 [Source:HGNC Symbol;Acc:10303]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:16:89291894..89294703(+)


>ENSPTRG00000008480
ATGGCGCCCAGCCGGAATGGCATGGTCTTGAAGCCCCACTTCCACAAGGACTGGCAGCGGCGCGTGGCCACGTGGTTCAA
CCAGCCGGCCCGGAAGATCCGCAGACGTAAGGCCCGGCAAGCCAAGGCGCGCCGCATCGCCCCGCGCCCCGCGTCGGGGC
CCATCCGGCCCATCGTGCGCTGCCCCACGGTTCGGTACCACACGAAGGTGCGCGCCGGCCGCGGCTTCAGCCTGGAGGAG
CTCAGGGTGGCCGGCATTCACAAGAAGGTGGCCCGGACCATCGGCATTTCTGTGGATCCGAGGAGGCGGAACAAGTCCAC
GGAGTCCCTGCAGGCCAACGTGCAGCGGCTGAAGGAGTACCGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCC
CCAAGAAGGGAGACAGTTCTGCTGAAGAACTGAAACTAGCCACCCAGCTGACCGGACCGGTCATGCCCATCCGGAACGTC
TATAAGAAGGAGAAAGCTCGAGTGATCACTGAGGAAGAGAAGAATTTCAAAGCCTTCGCTAGCCTCCGTATGGCCCGTGC
CAACGCCCGGCTCTTCGGCATACGGGCAAAAAGAGCCAAGGAAGCCGCAGAACAGGATGTTGAAAAGAAAAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 178 .87 RPM
SRP007412_cerebellum 146 .69 RPM
SRP007412_heart 85 .37 RPM
SRP007412_kidney 338 .80 RPM
SRP007412_liver 301 .87 RPM
SRP007412_testis 39 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017072 ortholog_one2one 1 retrogene
retro_acar_70,
Canis familiaris ENSCAFG00000019840 ortholog_one2one 5 retrogenes
retro_cfam_1135, retro_cfam_1919, retro_cfam_2122, retro_cfam_565, retro_cfam_897,
Callithrix jacchus ENSCJAG00000009672 possible_ortholog 5 retrogenes
retro_cjac_2607, retro_cjac_2961, retro_cjac_4054, retro_cjac_663, retro_cjac_747,
Cavia porcellus ENSCPOG00000027348 ortholog_one2one 4 retrogenes
retro_cpor_1014, retro_cpor_1192, retro_cpor_1242, retro_cpor_491,
Echinops telfairi ENSETEG00000015057 possible_ortholog 4 retrogenes
retro_etel_1240, retro_etel_1382, retro_etel_1606, retro_etel_703,
Felis catus ENSFCAG00000003338 ortholog_one2one 4 retrogenes
retro_fcat_1946, retro_fcat_706, retro_fcat_852, retro_fcat_866,
Homo sapiens ENSG00000167526 ortholog_one2one 12 retrogenes
retro_hsap_1377, retro_hsap_1810, retro_hsap_2070, retro_hsap_2430, retro_hsap_2485, retro_hsap_2824, retro_hsap_3207, retro_hsap_3281, retro_hsap_3443, retro_hsap_4074, retro_hsap_478, retro_hsap_951,
Microcebus murinus ENSMICG00000008191 ortholog_one2one 4 retrogenes
retro_mmur_249, retro_mmur_288, retro_mmur_779, retro_mmur_908,
Myotis lucifugus ENSMLUG00000010950 ortholog_one2one 6 retrogenes
retro_mluc_1431, retro_mluc_1436, retro_mluc_1549, retro_mluc_2022, retro_mluc_891, retro_mluc_991,
Monodelphis domestica ENSMODG00000003663 ortholog_one2one 4 retrogenes
retro_mdom_1001, retro_mdom_416, retro_mdom_439, retro_mdom_674,
Mus musculus ENSMUSG00000000740 possible_ortholog 23 retrogenes
retro_mmus_1091, retro_mmus_1522, retro_mmus_1533, retro_mmus_1854, retro_mmus_2074, retro_mmus_2163, retro_mmus_2186, retro_mmus_2321, retro_mmus_2333, retro_mmus_2351, retro_mmus_25, retro_mmus_2668, retro_mmus_2718, retro_mmus_3097, retro_mmus_3274, retro_mmus_3453, retro_mmus_3489, retro_mmus_3500, retro_mmus_355, retro_mmus_3711, retro_mmus_692, retro_mmus_732, retro_mmus_863,
Nomascus leucogenys ENSNLEG00000015774 ortholog_one2one 13 retrogenes
retro_nleu_1156, retro_nleu_1202, retro_nleu_2299, retro_nleu_238, retro_nleu_2457, retro_nleu_2530, retro_nleu_2657, retro_nleu_273, retro_nleu_2732, retro_nleu_2885, retro_nleu_3016, retro_nleu_789, retro_nleu_892,
Ornithorhynchus anatinus ENSOANG00000006729 ortholog_one2one 1 retrogene
retro_oana_78,
Otolemur garnettii ENSOGAG00000026444 ortholog_one2one 3 retrogenes
retro_ogar_1165, retro_ogar_1831, retro_ogar_1853,
Pteropus vampyrus ENSPVAG00000015130 ortholog_one2one 6 retrogenes
retro_pvam_1174, retro_pvam_1289, retro_pvam_1344, retro_pvam_228, retro_pvam_58, retro_pvam_616,
Rattus norvegicus ENSRNOG00000015335 possible_ortholog 14 retrogenes
retro_rnor_1054, retro_rnor_1260, retro_rnor_158, retro_rnor_160, retro_rnor_1719, retro_rnor_1720, retro_rnor_1834, retro_rnor_1848, retro_rnor_2471, retro_rnor_2574, retro_rnor_2608, retro_rnor_2787, retro_rnor_2854, retro_rnor_682,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_359 75.47 100.00
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2. retro_ptro_658 68.39 73.46
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3. retro_ptro_946 78.12 90.52
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4. retro_ptro_1175 97.17 100.00
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5. retro_ptro_1382 78.50 50.71
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6. retro_ptro_1402 79.39 77.25
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7. retro_ptro_1438 71.90 72.04
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8. retro_ptro_1914 60.77 59.72
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9. retro_ptro_2219 70.80 63.98
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10. retro_ptro_2242 63.24 85.78
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11. retro_ptro_2336 81.55 78.67
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12. retro_ptro_2761 76.43 73.93
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Download FASTA sequences of all ENSPTRG00000008480 retrocopies