RetrogeneDB ID: | retro_cpor_1014 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_4:28219816..28220184(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13 | ||
Ensembl ID: | ENSCPOG00000027348 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L13 [Source:UniProtKB/TrEMBL;Acc:H0W636] |
Percent Identity: | 70.16 % |
Parental protein coverage: | 58.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | IHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVM |
IHKKVA.T..ISVDPRR.NKST..L.A.VQ..KEY.SKL..F.RKP..PK.GDSSAEELKLATQL.GP.M | |
Retrocopy | IHKKVAWTTDISVDPRRQNKST*LL*AYVQWRKEYCSKLTFFLRKPLVPKRGDSSAEELKLATQLSGPAM |
Parental | PIRNVYKKEKARVITEEE-KNFKAFASLRMARANARLFGIRAKRAKEAAEQDVE |
PIRN.YK.EKARVITEEE.K.F...ASL.MA.AN..L..I...RA.EAAEQD.E | |
Retrocopy | PIRNIYKNEKARVITEEE<KTFQVLASLCMAHANTWLISILTNRAREAAEQDGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 127 .28 RPM |
SRP017611_kidney | 0 .00 RPM | 222 .67 RPM |
SRP017611_liver | 0 .04 RPM | 140 .46 RPM |
SRP040447_lung | 0 .00 RPM | 314 .10 RPM |
SRP040447_skeletal_muscle | 0 .05 RPM | 301 .96 RPM |