Parental gene:

Rpl13, ENSMUSG00000000740

Aliases:Rpl13, A52, L13
Description:ribosomal protein L13 [Source:MGI Symbol;Acc:MGI:105922]
Organism:Mouse (Mus musculus)
Coordinates:8:123102349..123105244(+)


>ENSMUSG00000000740
ATGGCGCCCAGCCGGAATGGCATGATACTGAAGCCCCACTTCCACAAGGATTGGCAGCAGCGAGTGGACACTTGGTTCAA
CCAGCCGGCGCGCAAGATCCGCAGGCGCAAGGCCCGGCAGGCGAAAGCGCGTCGCATCGCCCCTCGCCCCGCGTCCGGCC
CCATCAGGCCCATCGTGAGGTGCCCTACAGTGAGATACCACACCAAGGTCCGGGCTGGCAGGGGCTTCAGCCTGGAGGAG
CTCAGGGTGGCTGGCATCCACAAGAAAGTGGCTCGCACCATCGGCATCTCTGTGGACCCGAGGAGGCGAAACAAGTCCAC
GGAGTCACTGCAGGCCAACGTGCAGCGCCTGAAGGAGTACCGCTCCAAGCTCATCCTGTTCCCCAGGAAGCCTTCTGCTC
CGAAGAAGGGAGACAGTTCTGCTGAAGAACTTAAGCTGGCCACCCAGCTGACAGGACCTGTGATGCCCATCCGGAATGTG
TACAAAAAGGAAAAGGCCAGAGTTATCACAGAAGAAGAGAAGAACTTTAAGGCTTTTGCCAGTCTCCGAATGGCCCGTGC
CAATGCCCGACTCTTTGGCATCCGAGCAAAAAGGGCGAAGGAAGCTGCAGAGCAAGATGTTGAAAAGAAAAAATAA

Library Parental gene expression (RPM)
SRP007412_brain 36 .87 RPM
SRP007412_cerebellum 16 .93 RPM
SRP007412_heart 41 .50 RPM
SRP007412_kidney 25 .02 RPM
SRP007412_liver 22 .80 RPM
SRP007412_testis 37 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017072 ortholog_one2many 1 retrogene
retro_acar_70,
Ailuropoda melanoleuca ENSAMEG00000001111 possible_ortholog 5 retrogenes
retro_amel_1268, retro_amel_1319, retro_amel_188, retro_amel_411, retro_amel_802,
Bos taurus ENSBTAG00000012044 possible_ortholog 2 retrogenes
retro_btau_716, retro_btau_817,
Canis familiaris ENSCAFG00000019840 possible_ortholog 5 retrogenes
retro_cfam_1135, retro_cfam_1919, retro_cfam_2122, retro_cfam_565, retro_cfam_897,
Callithrix jacchus ENSCJAG00000009672 possible_ortholog 5 retrogenes
retro_cjac_2607, retro_cjac_2961, retro_cjac_4054, retro_cjac_663, retro_cjac_747,
Cavia porcellus ENSCPOG00000027348 possible_ortholog 4 retrogenes
retro_cpor_1014, retro_cpor_1192, retro_cpor_1242, retro_cpor_491,
Echinops telfairi ENSETEG00000015057 possible_ortholog 4 retrogenes
retro_etel_1240, retro_etel_1382, retro_etel_1606, retro_etel_703,
Felis catus ENSFCAG00000003338 possible_ortholog 4 retrogenes
retro_fcat_1946, retro_fcat_706, retro_fcat_852, retro_fcat_866,
Homo sapiens ENSG00000167526 possible_ortholog 12 retrogenes
retro_hsap_1377, retro_hsap_1810, retro_hsap_2070, retro_hsap_2430, retro_hsap_2485, retro_hsap_2824, retro_hsap_3207, retro_hsap_3281, retro_hsap_3443, retro_hsap_4074, retro_hsap_478, retro_hsap_951,
Gorilla gorilla ENSGGOG00000025427 possible_ortholog 6 retrogenes
retro_ggor_1548, retro_ggor_1963, retro_ggor_2231, retro_ggor_2732, retro_ggor_562, retro_ggor_767,
Loxodonta africana ENSLAFG00000004054 possible_ortholog 5 retrogenes
retro_lafr_659, retro_lafr_766, retro_lafr_827, retro_lafr_828, retro_lafr_829,
Microcebus murinus ENSMICG00000008191 possible_ortholog 4 retrogenes
retro_mmur_249, retro_mmur_288, retro_mmur_779, retro_mmur_908,
Myotis lucifugus ENSMLUG00000010950 possible_ortholog 6 retrogenes
retro_mluc_1431, retro_mluc_1436, retro_mluc_1549, retro_mluc_2022, retro_mluc_891, retro_mluc_991,
Macaca mulatta ENSMMUG00000017928 possible_ortholog 7 retrogenes
retro_mmul_2021, retro_mmul_2150, retro_mmul_2350, retro_mmul_579, retro_mmul_593, retro_mmul_737, retro_mmul_781,
Monodelphis domestica ENSMODG00000003663 ortholog_one2many 4 retrogenes
retro_mdom_1001, retro_mdom_416, retro_mdom_439, retro_mdom_674,
Nomascus leucogenys ENSNLEG00000015774 possible_ortholog 13 retrogenes
retro_nleu_1156, retro_nleu_1202, retro_nleu_2299, retro_nleu_238, retro_nleu_2457, retro_nleu_2530, retro_nleu_2657, retro_nleu_273, retro_nleu_2732, retro_nleu_2885, retro_nleu_3016, retro_nleu_789, retro_nleu_892,
Ornithorhynchus anatinus ENSOANG00000006729 ortholog_one2many 1 retrogene
retro_oana_78,
Otolemur garnettii ENSOGAG00000026444 possible_ortholog 3 retrogenes
retro_ogar_1165, retro_ogar_1831, retro_ogar_1853,
Pan troglodytes ENSPTRG00000008480 possible_ortholog 12 retrogenes
retro_ptro_1175, retro_ptro_1382, retro_ptro_1402, retro_ptro_1438, retro_ptro_1914, retro_ptro_2219, retro_ptro_2242, retro_ptro_2336, retro_ptro_2761, retro_ptro_359, retro_ptro_658, retro_ptro_946,
Pteropus vampyrus ENSPVAG00000015130 possible_ortholog 6 retrogenes
retro_pvam_1174, retro_pvam_1289, retro_pvam_1344, retro_pvam_228, retro_pvam_58, retro_pvam_616,
Rattus norvegicus ENSRNOG00000015335 possible_ortholog 14 retrogenes
retro_rnor_1054, retro_rnor_1260, retro_rnor_158, retro_rnor_160, retro_rnor_1719, retro_rnor_1720, retro_rnor_1834, retro_rnor_1848, retro_rnor_2471, retro_rnor_2574, retro_rnor_2608, retro_rnor_2787, retro_rnor_2854, retro_rnor_682,
Sus scrofa ENSSSCG00000024974 possible_ortholog 3 retrogenes
retro_sscr_1044, retro_sscr_725, retro_sscr_884,
Vicugna pacos ENSVPAG00000000569 possible_ortholog 4 retrogenes
retro_vpac_310, retro_vpac_312, retro_vpac_576, retro_vpac_631,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_25 95.26 100.00
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2. retro_mmus_355 51.09 63.51
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3. retro_mmus_692 72.77 99.53
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4. retro_mmus_732 94.22 81.52
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5. retro_mmus_863 94.34 100.00
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6. retro_mmus_1091 79.69 59.72
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7. retro_mmus_1522 70.76 79.62
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8. retro_mmus_1533 87.28 81.99
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9. retro_mmus_1854 95.28 100.00
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10. retro_mmus_2074 75.00 99.05
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11. retro_mmus_2163 99.05 100.00
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12. retro_mmus_2186 74.30 100.00
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13. retro_mmus_2321 100.00 100.00
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14. retro_mmus_2333 58.02 61.14
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15. retro_mmus_2351 86.88 75.83
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16. retro_mmus_2668 100.00 100.00
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17. retro_mmus_2718 72.09 81.52
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18. retro_mmus_3097 94.97 94.31
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19. retro_mmus_3274 70.75 98.10
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20. retro_mmus_3453 80.31 90.05
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21. retro_mmus_3489 81.99 100.00
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22. retro_mmus_3500 73.45 53.55
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23. retro_mmus_3711 81.69 100.00
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Download FASTA sequences of all ENSMUSG00000000740 retrocopies