Parental gene:

RPL13, ENSCJAG00000009672

Aliases:None
Description:60S ribosomal protein L13 [Source:UniProtKB/TrEMBL;Acc:H9KWM0]
Organism:Marmoset (Callithrix jacchus)
Coordinates:GL285849.1:78203..79949(+)


>ENSCJAG00000009672
AGGGCGCGCCGCATCGCCCCGCGCCCCGCGTCGGGGCCCATCCGGCCCATCGTGCGCTGCCCCACGGTTCGGTACCACAC
GAAGGTGCGCGCCGGCCGCGGCTTCAGCCTGGAGGAGCTCAGGGTGGCCGGCATTCACAAGAAGGTGGCCCGGACCATTG
GCATTTCTGTGGATCCGAGGAGGCGAAATAAGTCCACCGAGTCCCTGCAGGCCAACGTGCAGCGGCTGAAGGAGTACCGC
TCCAAGCTCATCCTGTTCCCCAGGAAGCCCTCGGCCCCGCAGAAGGGCGACAGTTCTGCTGAGGAACTGAAGCTTGCCAC
CCAGCTGACGGGACCGGTCATGCCCATCCGGAATGTCTATAAGAAGGAGAAAGCACGAGTCATCACTGAGGAGGAGAAGA
ATTTCAAAGCCTTCGCTAGTCTCCGCATGGCCCGTGCCAATGCCCGGCTCTTCGGCATACGGGCAAAAAGAGCCAAGGAA
GCTGCAGAGCAGGACGTGGAAAAGAAAAAATGA

Library Parental gene expression (RPM)
SRP051959_colon 77 .35 RPM
SRP051959_heart 53 .02 RPM
SRP051959_kidney 58 .70 RPM
SRP051959_liver 81 .77 RPM
SRP051959_lung 93 .41 RPM
SRP051959_lymph_node 195 .84 RPM
SRP051959_skeletal_muscle 83 .99 RPM
SRP051959_spleen 118 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017072 ortholog_one2many 1 retrogene
retro_acar_70,
Ailuropoda melanoleuca ENSAMEG00000001111 possible_ortholog 5 retrogenes
retro_amel_1268, retro_amel_1319, retro_amel_188, retro_amel_411, retro_amel_802,
Bos taurus ENSBTAG00000012044 possible_ortholog 2 retrogenes
retro_btau_716, retro_btau_817,
Canis familiaris ENSCAFG00000019840 ortholog_one2many 5 retrogenes
retro_cfam_1135, retro_cfam_1919, retro_cfam_2122, retro_cfam_565, retro_cfam_897,
Cavia porcellus ENSCPOG00000027348 ortholog_one2many 4 retrogenes
retro_cpor_1014, retro_cpor_1192, retro_cpor_1242, retro_cpor_491,
Echinops telfairi ENSETEG00000015057 possible_ortholog 4 retrogenes
retro_etel_1240, retro_etel_1382, retro_etel_1606, retro_etel_703,
Felis catus ENSFCAG00000003338 ortholog_one2many 4 retrogenes
retro_fcat_1946, retro_fcat_706, retro_fcat_852, retro_fcat_866,
Homo sapiens ENSG00000167526 possible_ortholog 12 retrogenes
retro_hsap_1377, retro_hsap_1810, retro_hsap_2070, retro_hsap_2430, retro_hsap_2485, retro_hsap_2824, retro_hsap_3207, retro_hsap_3281, retro_hsap_3443, retro_hsap_4074, retro_hsap_478, retro_hsap_951,
Gorilla gorilla ENSGGOG00000025427 ortholog_one2one 6 retrogenes
retro_ggor_1548, retro_ggor_1963, retro_ggor_2231, retro_ggor_2732, retro_ggor_562, retro_ggor_767,
Loxodonta africana ENSLAFG00000004054 possible_ortholog 5 retrogenes
retro_lafr_659, retro_lafr_766, retro_lafr_827, retro_lafr_828, retro_lafr_829,
Microcebus murinus ENSMICG00000008191 ortholog_one2many 4 retrogenes
retro_mmur_249, retro_mmur_288, retro_mmur_779, retro_mmur_908,
Myotis lucifugus ENSMLUG00000010950 ortholog_one2many 6 retrogenes
retro_mluc_1431, retro_mluc_1436, retro_mluc_1549, retro_mluc_2022, retro_mluc_891, retro_mluc_991,
Macaca mulatta ENSMMUG00000017928 possible_ortholog 7 retrogenes
retro_mmul_2021, retro_mmul_2150, retro_mmul_2350, retro_mmul_579, retro_mmul_593, retro_mmul_737, retro_mmul_781,
Monodelphis domestica ENSMODG00000003663 ortholog_one2many 4 retrogenes
retro_mdom_1001, retro_mdom_416, retro_mdom_439, retro_mdom_674,
Mus musculus ENSMUSG00000000740 possible_ortholog 23 retrogenes
retro_mmus_1091, retro_mmus_1522, retro_mmus_1533, retro_mmus_1854, retro_mmus_2074, retro_mmus_2163, retro_mmus_2186, retro_mmus_2321, retro_mmus_2333, retro_mmus_2351, retro_mmus_25, retro_mmus_2668, retro_mmus_2718, retro_mmus_3097, retro_mmus_3274, retro_mmus_3453, retro_mmus_3489, retro_mmus_3500, retro_mmus_355, retro_mmus_3711, retro_mmus_692, retro_mmus_732, retro_mmus_863,
Nomascus leucogenys ENSNLEG00000015774 possible_ortholog 13 retrogenes
retro_nleu_1156, retro_nleu_1202, retro_nleu_2299, retro_nleu_238, retro_nleu_2457, retro_nleu_2530, retro_nleu_2657, retro_nleu_273, retro_nleu_2732, retro_nleu_2885, retro_nleu_3016, retro_nleu_789, retro_nleu_892,
Ornithorhynchus anatinus ENSOANG00000006729 ortholog_one2many 1 retrogene
retro_oana_78,
Otolemur garnettii ENSOGAG00000026444 ortholog_one2many 3 retrogenes
retro_ogar_1165, retro_ogar_1831, retro_ogar_1853,
Pan troglodytes ENSPTRG00000008480 possible_ortholog 12 retrogenes
retro_ptro_1175, retro_ptro_1382, retro_ptro_1402, retro_ptro_1438, retro_ptro_1914, retro_ptro_2219, retro_ptro_2242, retro_ptro_2336, retro_ptro_2761, retro_ptro_359, retro_ptro_658, retro_ptro_946,
Pteropus vampyrus ENSPVAG00000015130 ortholog_one2many 6 retrogenes
retro_pvam_1174, retro_pvam_1289, retro_pvam_1344, retro_pvam_228, retro_pvam_58, retro_pvam_616,
Rattus norvegicus ENSRNOG00000015335 possible_ortholog 14 retrogenes
retro_rnor_1054, retro_rnor_1260, retro_rnor_158, retro_rnor_160, retro_rnor_1719, retro_rnor_1720, retro_rnor_1834, retro_rnor_1848, retro_rnor_2471, retro_rnor_2574, retro_rnor_2608, retro_rnor_2787, retro_rnor_2854, retro_rnor_682,
Sus scrofa ENSSSCG00000024974 possible_ortholog 3 retrogenes
retro_sscr_1044, retro_sscr_725, retro_sscr_884,
Vicugna pacos ENSVPAG00000000569 possible_ortholog 4 retrogenes
retro_vpac_310, retro_vpac_312, retro_vpac_576, retro_vpac_631,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_663 66.97 64.12
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2. retro_cjac_747 66.36 61.76
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3. retro_cjac_2607 63.83 54.71
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4. retro_cjac_2961 72.73 57.65
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5. retro_cjac_4054 83.33 62.94
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Download FASTA sequences of all ENSCJAG00000009672 retrocopies