Parental gene: | FAM136A, ENSPTRG00000012030 |
| Aliases: | None |
| Description: | family with sequence similarity 136, member A [Source:HGNC Symbol;Acc:25911] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 2A:71237127..71243232(-) |
>ENSPTRG00000012030
ATGGCTGAGCTGCAGCAGCTCCGGGTGCAGGAGGCGGTGGAGTCCATGGTGAAGAGTCTGGAAAGAGAGAACATCCGGAA
GATGCAGGGTCTCATGTTCCGGTGCAGCGCCAGCTGTTGTGAGGACAGCCAGGCCTCCATGAAGCAGGTGCACCAGTGCA
TCGAGCGCTGCCATGTGCCTCTGGCTCAAGCCCAGGCTTTGGTCACCAGTGAGTTGGAGAAGTTCCAGGACCGCCTGGCC
CGGTGCACCATGCATTGCAACGACAAAGCCAAAGATTCAATAGATGCTGGGAGTAAGGAGCTTCAGGTGAAGCAGCAGCT
GGACAGTTGTGTGACCAAGTGTGTGGATGACCACATGCACCTCATCCCAACTATGACCAAGAAGATGAAGGAGGCTCTCT
TATCAATTGGAAAATAA
ATGGCTGAGCTGCAGCAGCTCCGGGTGCAGGAGGCGGTGGAGTCCATGGTGAAGAGTCTGGAAAGAGAGAACATCCGGAA
GATGCAGGGTCTCATGTTCCGGTGCAGCGCCAGCTGTTGTGAGGACAGCCAGGCCTCCATGAAGCAGGTGCACCAGTGCA
TCGAGCGCTGCCATGTGCCTCTGGCTCAAGCCCAGGCTTTGGTCACCAGTGAGTTGGAGAAGTTCCAGGACCGCCTGGCC
CGGTGCACCATGCATTGCAACGACAAAGCCAAAGATTCAATAGATGCTGGGAGTAAGGAGCTTCAGGTGAAGCAGCAGCT
GGACAGTTGTGTGACCAAGTGTGTGGATGACCACATGCACCTCATCCCAACTATGACCAAGAAGATGAAGGAGGCTCTCT
TATCAATTGGAAAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 15 .39 RPM |
| SRP007412_cerebellum | 14 .77 RPM |
| SRP007412_heart | 10 .43 RPM |
| SRP007412_kidney | 19 .61 RPM |
| SRP007412_liver | 19 .08 RPM |
| SRP007412_testis | 5 .69 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000015992 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000008674 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000003353 | ortholog_one2many | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000009117 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000019447 | ortholog_one2one | 7 retrogenes | |
| Felis catus | ENSFCAG00000008119 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000035141 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000023247 | ortholog_one2one | 6 retrogenes | |
| Macropus eugenii | ENSMEUG00000015791 | ortholog_one2one | 8 retrogenes | |
| Macaca mulatta | ENSMMUG00000007962 | ortholog_one2many | 5 retrogenes | |
| Monodelphis domestica | ENSMODG00000011533 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000057497 | possible_ortholog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000012323 | ortholog_one2one | 6 retrogenes | |
| Rattus norvegicus | ENSRNOG00000016273 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000026446 | ortholog_one2one | 6 retrogenes | |
| Tupaia belangeri | ENSTBEG00000017418 | ortholog_one2one | 8 retrogenes | |
| Tursiops truncatus | ENSTTRG00000001198 | ortholog_one2one | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1237 | 82.01 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1523 | 83.09 | 98.55 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1809 | 88.89 | 91.30 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_2120 | 63.86 | 60.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_2318 | 88.41 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_3063 | 83.21 | 98.55 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000012030 retrocopies