RetrogeneDB ID: | retro_mmul_1772 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:70466347..70466772(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM136A | ||
Ensembl ID: | ENSMMUG00000007962 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.17 % |
Parental protein coverage: | 98.62 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GQRRVAMAELQQLRVQEAVDSMVKSLERENIRKMQGLMFRCSASCCEDS-QASMKQVHQCIERCHVPLAQ |
GQ.R..MAELQQLRVQE.VDSMVKSLERENI.KMQ.LMF.CS.SCCED..QASM.QVHQCI.R.HVPLAQ | |
Retrocopy | GQHRIIMAELQQLRVQEMVDSMVKSLERENIQKMQSLMFPCSTSCCEDT<QASMQQVHQCIQRSHVPLAQ |
Parental | AQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMHLIPTMTKKMKEAL |
..ALVTS..EKFQD..A.CT.HCNDK.KD.IDAGSKELQVK.QLD..VT.C.DDH.HLIPTMTKK.KEAL | |
Retrocopy | V*ALVTSKFEKFQDCQAWCTIHCNDKTKD*IDAGSKELQVKRQLDCRVTECIDDHVHLIPTMTKK-KEAL |
Parental | LSIG |
LSIG | |
Retrocopy | LSIG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 3 .81 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 6 .27 RPM |
SRP007412_cerebellum | 0 .00 RPM | 2 .39 RPM |
SRP007412_heart | 0 .00 RPM | 2 .12 RPM |
SRP007412_kidney | 0 .00 RPM | 1 .76 RPM |
SRP007412_liver | 0 .00 RPM | 2 .02 RPM |
SRP007412_testis | 0 .00 RPM | 0 .98 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2356 |