RetrogeneDB ID: | retro_dnov_2465 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | scaffold_7752:48790..49063(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | FAM136A | ||
| Ensembl ID: | ENSDNOG00000019447 | ||
| Aliases: | None | ||
| Description: | family with sequence similarity 136, member A [Source:HGNC Symbol;Acc:25911] |
Retrocopy-Parental alignment summary:
>retro_dnov_2465
GTGGCAGAGCTGCAGCAGTTCCATGTGCAAGAGGACACCATGGTGAAGAATCTGAAGAGAGAGAACATCCGGAAGATGCA
GAGAGCCATGTTCCGGTGCATCTCCAGCTGCTGTGAGGAGAGCCAGGTGTCCATGCAGCAGGTACATCAGTGCATTGAAT
GCTGCCAAGCACCTCTGGCTCAAGCCCAGGCCCTGGTGACGAGCAAGTTGGAGAAGTTCCAGGACCGCCTGGCCAGGTGC
ACCATGCATTGCAATGACAAAGCCAAAGACACT
ORF - retro_dnov_2465 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 79.57 % |
| Parental protein coverage: | 67.39 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MAELQQLRVQEAVDTMVKSLERENIRKMQGIMFRCSAGCCEDSQASMQQVHQCIERCHVPLAQAQALVTS |
| .AELQQ..VQE..DTMVK.L.RENIRKMQ..MFRC...CCE.SQ.SMQQVHQCIE.C..PLAQAQALVTS | |
| Retrocopy | VAELQQFHVQE--DTMVKNLKRENIRKMQRAMFRCISSCCEESQVSMQQVHQCIECCQAPLAQAQALVTS |
| Parental | ELEKFQDRLARCTMHCNDKAKDS |
| .LEKFQDRLARCTMHCNDKAKD. | |
| Retrocopy | KLEKFQDRLARCTMHCNDKAKDT |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .00 RPM | 15 .56 RPM |
| SRP012922_cerebellum | 0 .00 RPM | 3 .02 RPM |
| SRP012922_heart | 0 .00 RPM | 5 .80 RPM |
| SRP012922_kidney | 0 .00 RPM | 6 .57 RPM |
| SRP012922_liver | 0 .00 RPM | 4 .64 RPM |
| SRP012922_lung | 0 .00 RPM | 4 .43 RPM |
| SRP012922_quadricep_muscle | 0 .00 RPM | 9 .17 RPM |
| SRP012922_spleen | 0 .00 RPM | 4 .81 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_2465 was not experimentally validated.