Parental gene: | TMEM230, ENSPTRG00000013221 |
| Aliases: | None |
| Description: | transmembrane protein 230 [Source:HGNC Symbol;Acc:15876] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 20:4968133..4981403(-) |
>ENSPTRG00000013221
GTGCAACGTTGGGCGCTGCCAACCGTGGGCGAGCTCTGGGTGTGCGGGCGGCCTGGCGCGGCGCTCCGGTGGAGTCTAGT
TCTGTCACCCAGGCTGGAGCCCAGTGGTGCGATCTCAGCTCACTGCAATTTCCGCCTCCCGGCTTCAAGCGATTCTTCTG
CTTCAGCCTCCCGACTGTGGCAGCGTGTTATGATGCCGTCCCGTACCAACCTGGCTACCGGAATCCCCAGTAGTAAAGTG
AAATATTCAAGGCTCTCCAGCACAGACGATGGCTACATTGACCTTCAGTTTAAGAAAACCCCTCCTAAGATCCCTTATAA
GGCCATCGCACTTGCCACTGTGCTGTTTTTGATTGGCGCCTTTCTCATTATTATAGGCTCCCTCCTGCTGTCAGGCTACA
TCAGCAAAGGGGGGGCAGACCGGGCCGTTCCAGTCCTGATCATTGGCATTCTGGTGTTCCTACCCGGATTTTACCACCTG
CGCATCGCTTACTATGCATCCAAAGGCTACCGTGGTTACTCCTATGATGACATTCCAGACTTTGATGACTAG
GTGCAACGTTGGGCGCTGCCAACCGTGGGCGAGCTCTGGGTGTGCGGGCGGCCTGGCGCGGCGCTCCGGTGGAGTCTAGT
TCTGTCACCCAGGCTGGAGCCCAGTGGTGCGATCTCAGCTCACTGCAATTTCCGCCTCCCGGCTTCAAGCGATTCTTCTG
CTTCAGCCTCCCGACTGTGGCAGCGTGTTATGATGCCGTCCCGTACCAACCTGGCTACCGGAATCCCCAGTAGTAAAGTG
AAATATTCAAGGCTCTCCAGCACAGACGATGGCTACATTGACCTTCAGTTTAAGAAAACCCCTCCTAAGATCCCTTATAA
GGCCATCGCACTTGCCACTGTGCTGTTTTTGATTGGCGCCTTTCTCATTATTATAGGCTCCCTCCTGCTGTCAGGCTACA
TCAGCAAAGGGGGGGCAGACCGGGCCGTTCCAGTCCTGATCATTGGCATTCTGGTGTTCCTACCCGGATTTTACCACCTG
CGCATCGCTTACTATGCATCCAAAGGCTACCGTGGTTACTCCTATGATGACATTCCAGACTTTGATGACTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 52 .30 RPM |
| SRP007412_cerebellum | 33 .48 RPM |
| SRP007412_heart | 30 .69 RPM |
| SRP007412_kidney | 54 .45 RPM |
| SRP007412_liver | 35 .71 RPM |
| SRP007412_testis | 20 .87 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000006063 | possible_ortholog | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000010231 | ortholog_one2one | 12 retrogenes | |
| Callithrix jacchus | ENSCJAG00000021275 | ortholog_one2one | 2 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000014992 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000089063 | ortholog_one2one | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000006412 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000023089 | possible_ortholog | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000013258 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000007719 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000001386 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000010796 | ortholog_one2one | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000019378 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_413 | 75.76 | 53.01 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_3030 | 93.65 | 68.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_3257 | 79.65 | 60.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_3258 | 79.65 | 60.66 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000013221 retrocopies