Parental gene:

TMEM230, ENSPTRG00000013221

Aliases:None
Description:transmembrane protein 230 [Source:HGNC Symbol;Acc:15876]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:20:4968133..4981403(-)


>ENSPTRG00000013221
GTGCAACGTTGGGCGCTGCCAACCGTGGGCGAGCTCTGGGTGTGCGGGCGGCCTGGCGCGGCGCTCCGGTGGAGTCTAGT
TCTGTCACCCAGGCTGGAGCCCAGTGGTGCGATCTCAGCTCACTGCAATTTCCGCCTCCCGGCTTCAAGCGATTCTTCTG
CTTCAGCCTCCCGACTGTGGCAGCGTGTTATGATGCCGTCCCGTACCAACCTGGCTACCGGAATCCCCAGTAGTAAAGTG
AAATATTCAAGGCTCTCCAGCACAGACGATGGCTACATTGACCTTCAGTTTAAGAAAACCCCTCCTAAGATCCCTTATAA
GGCCATCGCACTTGCCACTGTGCTGTTTTTGATTGGCGCCTTTCTCATTATTATAGGCTCCCTCCTGCTGTCAGGCTACA
TCAGCAAAGGGGGGGCAGACCGGGCCGTTCCAGTCCTGATCATTGGCATTCTGGTGTTCCTACCCGGATTTTACCACCTG
CGCATCGCTTACTATGCATCCAAAGGCTACCGTGGTTACTCCTATGATGACATTCCAGACTTTGATGACTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 52 .30 RPM
SRP007412_cerebellum 33 .48 RPM
SRP007412_heart 30 .69 RPM
SRP007412_kidney 54 .45 RPM
SRP007412_liver 35 .71 RPM
SRP007412_testis 20 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006063 possible_ortholog 2 retrogenes
retro_btau_1079, retro_btau_147,
Choloepus hoffmanni ENSCHOG00000010231 ortholog_one2one 12 retrogenes
retro_chof_1228, retro_chof_1463, retro_chof_1812, retro_chof_2199, retro_chof_2210, retro_chof_2400, retro_chof_253, retro_chof_2584, retro_chof_2661, retro_chof_397, retro_chof_884, retro_chof_996,
Callithrix jacchus ENSCJAG00000021275 ortholog_one2one 2 retrogenes
retro_cjac_3112, retro_cjac_4206,
Erinaceus europaeus ENSEEUG00000014992 ortholog_one2one 1 retrogene
retro_eeur_77,
Homo sapiens ENSG00000089063 ortholog_one2one 3 retrogenes
retro_hsap_4890, retro_hsap_550, retro_hsap_783,
Loxodonta africana ENSLAFG00000006412 ortholog_one2one 1 retrogene
retro_lafr_1033,
Myotis lucifugus ENSMLUG00000023089 possible_ortholog 2 retrogenes
retro_mluc_1504, retro_mluc_1759,
Macaca mulatta ENSMMUG00000013258 ortholog_one2one 4 retrogenes
retro_mmul_1187, retro_mmul_2386, retro_mmul_2626, retro_mmul_856,
Nomascus leucogenys ENSNLEG00000007719 ortholog_one2one 3 retrogenes
retro_nleu_1256, retro_nleu_199, retro_nleu_723,
Otolemur garnettii ENSOGAG00000001386 ortholog_one2one 2 retrogenes
retro_ogar_1700, retro_ogar_3108,
Pongo abelii ENSPPYG00000010796 ortholog_one2one 3 retrogenes
retro_pabe_3801, retro_pabe_507, retro_pabe_916,
Ictidomys tridecemlineatus ENSSTOG00000019378 ortholog_one2many 1 retrogene
retro_itri_35,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_413 75.76 53.01
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2. retro_ptro_3030 93.65 68.31
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3. retro_ptro_3257 79.65 60.66
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4. retro_ptro_3258 79.65 60.66
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Download FASTA sequences of all ENSPTRG00000013221 retrocopies