Parental gene:

GM2A, ENSPTRG00000017431

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:5:152121175..152138471(+)


>ENSPTRG00000017431
ATGCAGTCCCTGATGCAGGCTCCCCTCCTGATCGCCCTGGGCTTGCTTCTCGCGGCCCCTGCGCAAGCCCACCTGAAAAA
GCCATCCCAGCTCAGTAGCTTTTCCTGGGATAACTGTGATGAAGGGAAGGACCCTGCAGTGATCAGAAGCCTGACTCTGG
AGCCTGACCCCATCATCGTTCCTGGGAATGTGACCCTCAGTGTCGTGGGCAGCACCAGTGTCCCCCTGAGTTCTCCTCTG
AAGGTGGATTTAGTTTTGGAGAAGGAGGTGGCTGGCCTCTGGATCAAGATCCCATGCACAGACTACATTGGCAGCTGTAC
CTTTGAACACTTCTGTGATGTGCTTGACATGTTAATTCCTACTGGGGAGCCCTGCCCAGAGCCCCTGCGTACCTATGGGC
TTCCTTGCCACTGTCCCTTCAAAGAAGGAACCTACTCACTGCCCAAGAGCGAATTCGTTGTGCCTGACCTGGAGCTGCCC
AGTTGGCTCACCACCGGGAACTACCGCATAGAGAGCGTCCTGAGCAGCGGTGGGAAGCGTCTGGGCTGCATCAAGATCGC
TGCCTCTCTAAAGGGCATATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 36 .36 RPM
SRP007412_cerebellum 40 .58 RPM
SRP007412_heart 24 .51 RPM
SRP007412_kidney 33 .08 RPM
SRP007412_liver 41 .02 RPM
SRP007412_testis 34 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Equus caballus ENSECAG00000020587 ortholog_one2one 1 retrogene
retro_ecab_510,
Homo sapiens ENSG00000196743 ortholog_one2one 2 retrogenes
retro_hsap_264, retro_hsap_2715,
Gorilla gorilla ENSGGOG00000015302 ortholog_one2one 2 retrogenes
retro_ggor_1891, retro_ggor_313,
Macropus eugenii ENSMEUG00000010421 ortholog_one2one 1 retrogene
retro_meug_1818,
Microcebus murinus ENSMICG00000000690 ortholog_one2one 1 retrogene
retro_mmur_518,
Myotis lucifugus ENSMLUG00000003215 ortholog_one2one 1 retrogene
retro_mluc_920,
Macaca mulatta ENSMMUG00000022869 ortholog_one2one 1 retrogene
retro_mmul_454,
Nomascus leucogenys ENSNLEG00000010966 ortholog_one2one 1 retrogene
retro_nleu_866,
Oryctolagus cuniculus ENSOCUG00000015837 ortholog_one2many 1 retrogene
retro_ocun_704,
Ochotona princeps ENSOPRG00000006171 ortholog_one2one 1 retrogene
retro_opri_1169,
Pongo abelii ENSPPYG00000015962 ortholog_one2one 1 retrogene
retro_pabe_403,
Ictidomys tridecemlineatus ENSSTOG00000028500 ortholog_one2one 1 retrogene
retro_itri_759,
Tursiops truncatus ENSTTRG00000000503 ortholog_one2one 1 retrogene
retro_ttru_488,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_221 64.90 75.65
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2. retro_ptro_1834 73.79 52.85
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Download FASTA sequences of all ENSPTRG00000017431 retrocopies