Parental gene: | LAPTM4B, ENSPTRG00000020448 |
| Aliases: | None |
| Description: | lysosomal protein transmembrane 4 beta [Source:HGNC Symbol;Acc:13646] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 8:96029445..96106851(+) |
>ENSPTRG00000020448
ATGACGTCACGGACTCGGGTCACATGGCCGAGTCCGCCCCGCCCCCGCCCCCTCCCCGTCCCCGCCGCTGCAGCCGTCGC
CTTCGGAGCGAAGGGTACCGACCCGGCAGAAGCTCGGAGCTCTCGGGGTATCGAGGAGGCAGGCCCGCGGGCGCACGGGC
GAGCGGGCCGGGAGCCGGAGCGGCGGAGGAGCCGGCAGCAGCGGCGCGGCGGGCTCCAGGCGAGGCGGTCGAAGCTCCTG
AAAACTTGCGCGCGCGCTCGCGCCACTGCGCCCGGAGCGATGAAGATGGTCGCGCCCTGGACGCGGTTCTACTCCAACAG
CTGCTGCTTGTGCTGCCATGTCCGCACCGGCACCATTCTGCTCGGCGTCTGGTATCTGATCATCAATGCTGTGGTACTGT
TGATTTTATTGAGTGCCCTGGCTGATCCAGATCAGTATCACTTTTCAAGTTCTGAACTGGGAGGTGACTTTGAGTTCATG
GATGATGCCAACATGTGCATTGCCATTGCGATTTCTCTTCTCATGATCCTGATATGTGCTATGGCTACTTACGGAGCGTA
CAAGCAACGCGCAGCCTGGATCATCCCATTCTTCTGTTACCAGATCTTTGACTTTGCCCTGAACATGTTGGTTGCAATCA
CTGTGCTTATTTATCCAAACTCCATTCAGGAATACATACGGCAACTGCCTCCTAATTTTCCCTACAGAGATGATGTCATG
TCAGTGAATCCTACCTGTTTGGTCCTTATTATTCTTCTGTTTATTAGCATTATCTTGACTTTTAAGGGTTACTTGATTAG
CTGTGTTTGGAACTGCTACCGATACATCAATGGTAGGAACTCCTCTGATGTCCTGGTTTATGTTACCAGCAATGACACTA
CGGTGCTGCTACCCCCGTATGATGATGCCACTGTGAATGGTGCTGCCAAGGAGCCACCGCCACCTTACGTGTCTGCCTAA
ATGACGTCACGGACTCGGGTCACATGGCCGAGTCCGCCCCGCCCCCGCCCCCTCCCCGTCCCCGCCGCTGCAGCCGTCGC
CTTCGGAGCGAAGGGTACCGACCCGGCAGAAGCTCGGAGCTCTCGGGGTATCGAGGAGGCAGGCCCGCGGGCGCACGGGC
GAGCGGGCCGGGAGCCGGAGCGGCGGAGGAGCCGGCAGCAGCGGCGCGGCGGGCTCCAGGCGAGGCGGTCGAAGCTCCTG
AAAACTTGCGCGCGCGCTCGCGCCACTGCGCCCGGAGCGATGAAGATGGTCGCGCCCTGGACGCGGTTCTACTCCAACAG
CTGCTGCTTGTGCTGCCATGTCCGCACCGGCACCATTCTGCTCGGCGTCTGGTATCTGATCATCAATGCTGTGGTACTGT
TGATTTTATTGAGTGCCCTGGCTGATCCAGATCAGTATCACTTTTCAAGTTCTGAACTGGGAGGTGACTTTGAGTTCATG
GATGATGCCAACATGTGCATTGCCATTGCGATTTCTCTTCTCATGATCCTGATATGTGCTATGGCTACTTACGGAGCGTA
CAAGCAACGCGCAGCCTGGATCATCCCATTCTTCTGTTACCAGATCTTTGACTTTGCCCTGAACATGTTGGTTGCAATCA
CTGTGCTTATTTATCCAAACTCCATTCAGGAATACATACGGCAACTGCCTCCTAATTTTCCCTACAGAGATGATGTCATG
TCAGTGAATCCTACCTGTTTGGTCCTTATTATTCTTCTGTTTATTAGCATTATCTTGACTTTTAAGGGTTACTTGATTAG
CTGTGTTTGGAACTGCTACCGATACATCAATGGTAGGAACTCCTCTGATGTCCTGGTTTATGTTACCAGCAATGACACTA
CGGTGCTGCTACCCCCGTATGATGATGCCACTGTGAATGGTGCTGCCAAGGAGCCACCGCCACCTTACGTGTCTGCCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 28 .60 RPM |
| SRP007412_cerebellum | 14 .27 RPM |
| SRP007412_heart | 94 .14 RPM |
| SRP007412_kidney | 40 .72 RPM |
| SRP007412_liver | 4 .58 RPM |
| SRP007412_testis | 25 .82 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000016959 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000031235 | ortholog_one2many | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000008926 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000003756 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000000512 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000018771 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000003124 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_546 | 99.30 | 89.03 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000020448 retrocopies