Parental gene:

SFRS13A, ENSPTRG00000024234

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:24000357..24011721(-)


>ENSPTRG00000024234
ATGTCCCGCTACCTGCGTCCCCCCAACACGTCTCTGTTCGTCAGGAACGTGGCCGACGACACCAGGTCTGAAGACTTGCG
GCGTGAATTTGGTCGTTATGGTCCTATAGTTGATGTGTATGTTCCACTTGATTTCTACACTCGCCGTCCAAGAGGATTTG
CTTATGTTCAATTTGAGGATGTTCGTGATGCTGAAGACGCTTTACATAATTTGGATAGAAAGTGGATTTGTGGACGGCAG
ATTGAAATACAGTTTGCCCAGGGTGATCGAAAGACACCAAATCAGATGAAAGCCAAGGAAGGGAGGAATGTGTACAGTTC
TTCACGCTATGATGATTATGACAGATACAGACGTTCTAGAAGCCGAAGTTATGAAAGGAGGAGATCAAGAAGTCGGTCTT
TTGATTACAACTATAGAAGATCGTATAGTCCTAGAAACAGTAGACCGACTGGAAGACCACGGCGTAGCAGAAGCCATTCC
GACAATGATAGATTCAAACACCGAAATCGATCTTTTTCAAGATCTAAATCCAATTCAAGATCACGGTCCAAGTCCCAGCC
CAAGAAAGAAATGAAGGCTAAATCACGTTCTAGGTCTGCATCTCACACCAAAACTAGAGGCACCTCTAAAACAGATTCCA
AAACACATTATAAGTCTGGCTCAAGATATGAAAAGGAATCAAGGAAAAAAGAACCACCTAGATCCAAATCTCAGTCAAGA
TCACAGTCTAGGTCTAGGTCAAAATCTAGATCAAGGTCTTGGACTAGTCCTAAGTCCAGTGGCCACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 24 .08 RPM
SRP007412_cerebellum 60 .08 RPM
SRP007412_heart 27 .57 RPM
SRP007412_kidney 34 .28 RPM
SRP007412_liver 24 .06 RPM
SRP007412_testis 74 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004836 possible_ortholog 1 retrogene
retro_chof_7,
Callithrix jacchus ENSCJAG00000020883 possible_ortholog 9 retrogenes
retro_cjac_1126, retro_cjac_1170, retro_cjac_2176, retro_cjac_2595, retro_cjac_2638, retro_cjac_3852, retro_cjac_628, retro_cjac_705, retro_cjac_864,
Cavia porcellus ENSCPOG00000024533 ortholog_one2one 1 retrogene
retro_cpor_1098,
Dasypus novemcinctus ENSDNOG00000008699 possible_ortholog 3 retrogenes
retro_dnov_1327, retro_dnov_1809, retro_dnov_2244,
Erinaceus europaeus ENSEEUG00000014286 ortholog_one2one 1 retrogene
retro_eeur_522,
Homo sapiens ENSG00000188529 possible_ortholog 5 retrogenes
retro_hsap_1343, retro_hsap_1940, retro_hsap_2445, retro_hsap_3054, retro_hsap_4295,
Loxodonta africana ENSLAFG00000026905 ortholog_one2one 1 retrogene
retro_lafr_148,
Myotis lucifugus ENSMLUG00000028520 possible_ortholog 1 retrogene
retro_mluc_89,
Mus musculus ENSMUSG00000028676 ortholog_one2one 5 retrogenes
retro_mmus_1081, retro_mmus_1311, retro_mmus_1814, retro_mmus_3480, retro_mmus_982,
Ochotona princeps ENSOPRG00000018613 ortholog_one2one 3 retrogenes
retro_opri_1067, retro_opri_295, retro_opri_916,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_918 79.38 96.95
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2. retro_ptro_1295 72.56 81.30
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3. retro_ptro_1413 83.82 51.53
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4. retro_ptro_1986 75.67 99.62
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Download FASTA sequences of all ENSPTRG00000024234 retrocopies