RetrogeneDB ID: | retro_dnov_2244 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_58046:970..1377(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000008699 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.54 % |
Parental protein coverage: | 51.91 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | RRSRSRSFDYKKRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRSKSQPKKEMKAKSR |
RRS.S.S.DY..RRSYS.R.SR.TGRP...R.HS.N.RFKH.N.SFS..KSNSRS.SKS.PKKEMK.KS. | |
Retrocopy | RRSGSLSLDYNYRRSYSSRHSRQTGRPWCRRCHSKNNRFKH*N*SFSIPKSNSRSWSKSHPKKEMKTKSY |
Parental | SRSASHTKTR-GTSKTDS-KTHYKSGSRYEKESRK-KEPPRSKSQSRSQSRSRSKSRSRSWTSPKSSGH |
SRSASHTK.R.GTSKTDS.KTHYKSGSR.EKESRK.KEPP.SKSQ.R.Q...RSKSRS.SWTSPKSSGH | |
Retrocopy | SRSASHTKMR<GTSKTDS>KTHYKSGSRHEKESRK<KEPPQSKSQPRLQPKPRSKSRSKSWTSPKSSGH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 19 .84 RPM |
SRP012922_cerebellum | 0 .00 RPM | 14 .57 RPM |
SRP012922_heart | 0 .00 RPM | 7 .43 RPM |
SRP012922_kidney | 0 .00 RPM | 7 .12 RPM |
SRP012922_liver | 0 .00 RPM | 7 .12 RPM |
SRP012922_lung | 0 .00 RPM | 16 .19 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 8 .65 RPM |
SRP012922_spleen | 0 .11 RPM | 19 .12 RPM |