RetrogeneDB ID: | retro_cpor_1098 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_46:5694226..5694634(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000024533 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.87 % |
Parental protein coverage: | 58.65 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | RREFGRYGPIVDVYVPLDFYTRRPRGFAYVQYTFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPN |
R..FG.Y..I.DVY.PL.FYT..PR.F.Y.Q...ED..D.ED.LHNL..KWICGRQIEIQ.A....KT.N | |
Retrocopy | RHKFGHYSLIIDVYIPLNFYTDCPRLFVYIQ--LEDALDTEDTLHNLGKKWICGRQIEIQLA*LNQKTSN |
Parental | QMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDND |
QMKAK.G.N.Y..S...D..RYR..RSRSYERR.S...SFDY..RR..SP.N.RPTGRP.RSR.HS.ND | |
Retrocopy | QMKAKKGKNMYNYSC*NDFNRYRCFRSRSYERR*SKDQSFDYKNRRYCSPKN-RPTGRPARSRNHSNND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 22 .82 RPM |
SRP017611_liver | 0 .00 RPM | 15 .63 RPM |
SRP040447_lung | 0 .00 RPM | 24 .39 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 11 .52 RPM |