Parental gene: | ENSCJAG00000020883 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:57959595..57975882(-) |
>ENSCJAG00000020883
ATGTCTCGCTACCTGCGTCCCCCAAACACGTCTCTGTTCGTCAGGAACGTGGCCGACGACACCAGGTCTGAAGATTTACG
GCGTGAATTTGGTCGTTATGGTCCTATAGTTGATGTGTATGTTCCACTTGATTTCTACACTCGCCGTCCAAGAGGATTTG
CTTATGTTCAATTTGAGGATGTTCGTGATGCTGAAGATGCTTTACATAATTTGGACAGAAAGTGGATTTGTGGACGGCAG
ATTGAAATACAGTTTGCCCAGGGGGATCGGAAGACACCAAATCAGATGAAAGCCAAGGAAGGGAGGAATGTGTACAGTTC
TTCACGCTATGATGATTATGACAGATACAGACGTTCAAGAAGCCGAAGTTACGAAAGAAGGAGATCAAGAAGTCGGTCTT
TTGATTACAACTATAGAAGATCGTATAGTCCTAGAAGCAGTAGACCGACTGGAAGACCACGGCGTAGCAGAAGCCATTCC
GACAATGATAGATTCAAACACCGAAATCGATCTTTTTCAAGATCTAAATCCAATTCAAGATCACGGTCCAAGTCCCAGCC
CAAGAAAGAAATGAAGGCTAAATCACGTTCTAGGTCTGCATCTCACACCAAAACTAGAGGCACCTCTAAAACAGATTCCA
AAACACATTATAAGTCTGGCTCAAGATATGAAAAGGAATCAAGGAAAAAAGAACCACCTAGATCCAAATCTCAGTCAAGA
TCACAGTCTAGGTCTAGGTCAAAATCTAGATCAAGGTCTTGGACTAGTCCTAAGTCCAGTGGCCACTGA
ATGTCTCGCTACCTGCGTCCCCCAAACACGTCTCTGTTCGTCAGGAACGTGGCCGACGACACCAGGTCTGAAGATTTACG
GCGTGAATTTGGTCGTTATGGTCCTATAGTTGATGTGTATGTTCCACTTGATTTCTACACTCGCCGTCCAAGAGGATTTG
CTTATGTTCAATTTGAGGATGTTCGTGATGCTGAAGATGCTTTACATAATTTGGACAGAAAGTGGATTTGTGGACGGCAG
ATTGAAATACAGTTTGCCCAGGGGGATCGGAAGACACCAAATCAGATGAAAGCCAAGGAAGGGAGGAATGTGTACAGTTC
TTCACGCTATGATGATTATGACAGATACAGACGTTCAAGAAGCCGAAGTTACGAAAGAAGGAGATCAAGAAGTCGGTCTT
TTGATTACAACTATAGAAGATCGTATAGTCCTAGAAGCAGTAGACCGACTGGAAGACCACGGCGTAGCAGAAGCCATTCC
GACAATGATAGATTCAAACACCGAAATCGATCTTTTTCAAGATCTAAATCCAATTCAAGATCACGGTCCAAGTCCCAGCC
CAAGAAAGAAATGAAGGCTAAATCACGTTCTAGGTCTGCATCTCACACCAAAACTAGAGGCACCTCTAAAACAGATTCCA
AAACACATTATAAGTCTGGCTCAAGATATGAAAAGGAATCAAGGAAAAAAGAACCACCTAGATCCAAATCTCAGTCAAGA
TCACAGTCTAGGTCTAGGTCAAAATCTAGATCAAGGTCTTGGACTAGTCCTAAGTCCAGTGGCCACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 32 .00 RPM |
| SRP051959_skeletal_muscle | 12 .95 RPM |
| SRP051959_lymph_node | 36 .78 RPM |
| SRP051959_lung | 28 .01 RPM |
| SRP051959_liver | 18 .06 RPM |
| SRP051959_kidney | 25 .16 RPM |
| SRP051959_heart | 18 .47 RPM |
| SRP051959_colon | 20 .70 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009869 | ortholog_one2one | 2 retrogenes | |
| Bos taurus | ENSBTAG00000008072 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000004836 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000024533 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000008699 | possible_ortholog | 3 retrogenes | |
| Dipodomys ordii | ENSDORG00000009136 | possible_ortholog | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000014286 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000188529 | ortholog_one2many | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000000392 | ortholog_one2one | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000026905 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000028520 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000015845 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000028676 | possible_ortholog | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013180 | ortholog_one2many | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000029326 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000015374 | ortholog_one2one | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000018613 | possible_ortholog | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000001726 | ortholog_one2many | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000024234 | possible_ortholog | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000007992 | ortholog_one2one | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000021615 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000000956 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000017716 | possible_ortholog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000016150 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_628 | 76.03 | 66.12 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_705 | 78.79 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_864 | 96.98 | 75.57 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1126 | 88.93 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_1170 | 67.38 | 70.23 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_2176 | 64.47 | 81.97 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_2595 | 75.16 | 87.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cjac_2638 | 82.32 | 74.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cjac_3852 | 91.98 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000020883 retrocopies