Parental gene: | UFM1, ENSPTRG00000040645 |
| Aliases: | None |
| Description: | ubiquitin-fold modifier 1 [Source:HGNC Symbol;Acc:20597] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 13:38011868..38023573(+) |
>ENSPTRG00000040645
TCGAAGGTTTCCTTTAAGATCACGCTGACGTCGGACCCACGGCTGCCGTACAAAGTACTCAGTGTTCCTGAAAGTACACC
TTTCACAGCAGTCTTAAAGTTTGCAGCAGAAGAATTTAAAGTTCCTGCTGCAACAAGTGCAATTATTACCAATGATGGAA
TAGGAATAAATCCTGCACAGACTGCTGGAAATGTTTTTCTAAAACATGGTTCAGAACTGCGGATTATTCCTAGAGATCGT
GTTGGAAGTTGTTAA
TCGAAGGTTTCCTTTAAGATCACGCTGACGTCGGACCCACGGCTGCCGTACAAAGTACTCAGTGTTCCTGAAAGTACACC
TTTCACAGCAGTCTTAAAGTTTGCAGCAGAAGAATTTAAAGTTCCTGCTGCAACAAGTGCAATTATTACCAATGATGGAA
TAGGAATAAATCCTGCACAGACTGCTGGAAATGTTTTTCTAAAACATGGTTCAGAACTGCGGATTATTCCTAGAGATCGT
GTTGGAAGTTGTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 3 .74 RPM |
| SRP007412_cerebellum | 4 .27 RPM |
| SRP007412_heart | 2 .33 RPM |
| SRP007412_kidney | 8 .37 RPM |
| SRP007412_liver | 5 .56 RPM |
| SRP007412_testis | 2 .21 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000006026 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000017903 | ortholog_one2one | 4 retrogenes | |
| Equus caballus | ENSECAG00000014564 | ortholog_one2one | 3 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000008471 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000120686 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000026214 | ortholog_one2one | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000001660 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000008048 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000014990 | ortholog_one2one | 3 retrogenes | |
| Mus musculus | ENSMUSG00000027746 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000002556 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000007023 | ortholog_one2one | 6 retrogenes | |
| Pongo abelii | ENSPPYG00000005293 | ortholog_one2one | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000038176 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000021299 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000016449 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000011105 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000015482 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1169 | 84.62 | 77.38 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1660 | 78.46 | 76.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2779 | 84.85 | 76.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_3174 | 64.18 | 79.76 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000040645 retrocopies