Parental gene:

Snrpb, ENSRNOG00000006961

Aliases:None
Description:small nuclear ribonucleoprotein-associated protein B [Source:RefSeq peptide;Acc:NP_599185]
Organism:Rat (Rattus norvegicus)
Coordinates:3:129196989..129204596(-)


>ENSRNOG00000006961
ATGACGGTGGGCAAGAGCAGCAAGATGCTGCAGCACATCGACTACAGGATGAGGTGCATCCTGCAAGATGGCCGGATCTT
CATCGGGACCTTCAAAGCTTTTGACAAGCATATGAACTTGATCCTCTGTGACTGTGATGAGTTCAGGAAGATCAAGCCAA
AGAACTCCAAACAAGCAGAAAGAGAAGAGAAGCGAGTCCTTGGTCTGGTGTTGCTTCGAGGAGAGAACCTGGTCTCCATG
ACAGTAGAAGGACCTCCTCCCAAAGATACTGGCATTGCCCGAGTGCCACTTGCTGGAGCTGCTGGGGGGCCAGGCATCGG
CAGGGCTGCTGGCAGAGGAATCCCGGCGGGTGTGCCCATGCCCCAGGCTCCTGCAGGGCTTGCTGGACCAGTGCGAGGTG
TTGGAGGGCCGTCCCAGCAGGTGATGACCCCACAAGGAAGAGGCACTGTGGCAGCTGCTGCAGCTGCAGCCACAGCCAGT
ATTGCAGGAGCCCCAACTCAGTACCCACCTGGTCGTGGGGGTCCTCCTCCACCTATGGGCCGAGGGGCACCTCCTCCAGG
TATGATGGGCCCACCTCCTGGCATGAGGCCTCCCATGGGTCCCCCAATGGGGATCCCTCCTGGCCGAGGAACTCCAATGG
GCATGCCCCCTCCTGGGATGCGACCTCCTCCTCCAGGCATGCGAGGTCTGCTTTGA

Library Parental gene expression (RPM)
SRP017611_brain 22 .86 RPM
SRP017611_kidney 69 .71 RPM
SRP017611_liver 24 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000006693 possible_ortholog 3 retrogenes
retro_cfam_1268, retro_cfam_1773, retro_cfam_461,
Callithrix jacchus ENSCJAG00000020971 possible_ortholog 2 retrogenes
retro_cjac_172, retro_cjac_1739,
Mus musculus ENSMUSG00000027404 ortholog_one2one 3 retrogenes
retro_mmus_2938, retro_mmus_3450, retro_mmus_554,
Otolemur garnettii ENSOGAG00000016149 possible_ortholog 4 retrogenes
retro_ogar_2197, retro_ogar_2841, retro_ogar_2918, retro_ogar_3236,
Rattus norvegicus ENSRNOG00000015976 within_species_paralog 6 retrogenes
retro_rnor_1122, retro_rnor_1314, retro_rnor_1485, retro_rnor_2161, retro_rnor_2462, retro_rnor_2517,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_474 63.27 83.12
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2. retro_rnor_2825 71.76 55.41
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Download FASTA sequences of all ENSRNOG00000006961 retrocopies