Parental gene:

ENSCJAG00000020971

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:8287991..8300563(-)


>ENSCJAG00000020971
ATGACGGTGGGCTTGAGCAGCAAGATGCTGCAGCATATTGACTACAGGATGAGGTGCATCCTGCAGGACGGCCGGATCTT
CATTGGCACCTTCAAGGCTTTTGACAAGCACATGAATTTGATCCTCTGTGACTGTGATGAGTTCAGGAAGATCAAGCCAA
AGAACTCCAAACAAGCTGAAAGGGAAGAGAAGCGAGTCCTTGGTCTGGTGCTGCTGCGAGGGGAGAACCTGGTCTCGATG
ACAGTAGAGGGACCTCCTCCCAAAGATACTGGTATTGCTCGAGTACCACTTGCTGGAGCTGCCGGGGGTCCAGGGATTGG
CAGGGCTGCTGGCAGAGGAATCCCAGCTGGGGTTCCCATGCCCCAGGCTCCTGCAGGACTTGCTGGGCCAGTTCGTGGGG
TTGGCGGGCCATCTCAACAGGTGATGACCCCACAAGGAAGGGGCACTGTTGCAGCCGCTGCAGCTGCTGCCACAGCCAGT
ATTGCCGGGGCCCCGACCCAGTATCCACCTGGCCGTGGGGGTCCTCCCCCTCCTATGGGCCGAGGAGCACCCCCTCCAGG
CATGATGGGTCCACCTCCTGGTATGAGGCCTCCTATGGGTCCCCCAATGGGGATCCCTCCTGGAAGAGGGACTCCAATGG
GCATGCCCCCTCCGGGAATGCGGCCTCCTCCCCCTGGATGCGAGGCCTTCTTTGATCCTTGGCCACAGAGTATGGAAGTA
GCTCCGCAGAGGTGTGGGCTCGATTCCTCAGGGCCACGTTACCACAGACCTGTTTGTTTGTTATGCTGTTGTTCGCGGAG
TCTCACCGGGTTGTCTGGTTTCCTTACAGGGCCCCCTCCCCCGGGAATGCGCCCACCAAGGCCCTAG

Library Parental gene expression (RPM)
SRP051959_spleen 15 .48 RPM
SRP051959_skeletal_muscle 14 .98 RPM
SRP051959_lymph_node 20 .73 RPM
SRP051959_lung 14 .27 RPM
SRP051959_liver 14 .49 RPM
SRP051959_kidney 14 .49 RPM
SRP051959_heart 10 .84 RPM
SRP051959_colon 18 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011353 ortholog_one2many 1 retrogene
retro_amel_1403,
Canis familiaris ENSCAFG00000006693 ortholog_many2many 3 retrogenes
retro_cfam_1268, retro_cfam_1773, retro_cfam_461,
Dasypus novemcinctus ENSDNOG00000007896 ortholog_one2many 2 retrogenes
retro_dnov_2060, retro_dnov_2471,
Erinaceus europaeus ENSEEUG00000015568 ortholog_one2many 3 retrogenes
retro_eeur_312, retro_eeur_434, retro_eeur_6,
Felis catus ENSFCAG00000014447 ortholog_one2many 2 retrogenes
retro_fcat_1788, retro_fcat_1960,
Microcebus murinus ENSMICG00000016519 ortholog_one2many 4 retrogenes
retro_mmur_1012, retro_mmur_1478, retro_mmur_546, retro_mmur_861,
Myotis lucifugus ENSMLUG00000016951 ortholog_one2many 1 retrogene
retro_mluc_1725,
Mustela putorius furo ENSMPUG00000009283 ortholog_one2many 1 retrogene
retro_mputfur_1153,
Mus musculus ENSMUSG00000027404 possible_ortholog 3 retrogenes
retro_mmus_2938, retro_mmus_3450, retro_mmus_554,
Nomascus leucogenys ENSNLEG00000009206 ortholog_one2many 1 retrogene
retro_nleu_761,
Otolemur garnettii ENSOGAG00000016149 ortholog_one2many 4 retrogenes
retro_ogar_2197, retro_ogar_2841, retro_ogar_2918, retro_ogar_3236,
Ochotona princeps ENSOPRG00000007459 ortholog_one2many 2 retrogenes
retro_opri_697, retro_opri_72,
Pongo abelii ENSPPYG00000010841 ortholog_one2many 1 retrogene
retro_pabe_2265,
Pteropus vampyrus ENSPVAG00000017013 ortholog_one2many 1 retrogene
retro_pvam_289,
Rattus norvegicus ENSRNOG00000006961 possible_ortholog 2 retrogenes
retro_rnor_2825, retro_rnor_474,
Tupaia belangeri ENSTBEG00000010040 ortholog_one2many 3 retrogenes
retro_tbel_1117, retro_tbel_1171, retro_tbel_2839,
Tarsius syrichta ENSTSYG00000014498 ortholog_one2many 2 retrogenes
retro_tsyr_45, retro_tsyr_719,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_172 91.27 99.13
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2. retro_cjac_1739 77.56 69.79
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Download FASTA sequences of all ENSCJAG00000020971 retrocopies