Parental gene:

Spin1, ENSRNOG00000011119

Aliases:None
Description:Spindlin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q4V8J7]
Organism:Rat (Rattus norvegicus)
Coordinates:16:879501..925738(-)


>ENSRNOG00000011119
ATGAAGACCCCATTCGGGAAGACACCTGGCCAGCGGTCCAGAGCTGATGCAGGCCATGCTGGAGTCTCTGCAAACATGAT
GAAGAAGAGGACATCTCACAAAAAACATCGGACCAGTGTGGGACCAAGCAAACCTGTGTCCCAGCCCCGGCGGAACATCG
TAGGCTGCAGGATCCAGCATGGGTGGAGAGAGGGCAACGGCCCTGTCACCCAGTGGAAGGGGACTGTCCTGGACCAGGTG
CCTGTGAACCCTTCCCTGTATCTCATAAAGTACGATGGATTTGACTGTGTCTATGGACTAGAGCTGAACAAGGATGACAG
AGTCTCTGCACTTGAAGTCCTCCCTGACAGAGTTGCAACATCTCGGATTAGCGATGCACACTTAGCGGACACAATGATTG
GCAAAGCGGTGGAGCACATGTTTGAAACAGAGGATGGCTCTAAAGATGAGTGGAGGGGGATGGTCTTGGCACGGGCACCA
GTCATGAACACATGGTTTTACATCACCTATGAGAAAGACCCTGTCTTGTACATGTACCAGCTCCTAGATGATTACAAAGA
AGGCGACCTCCGCATTATGCCCGATTCCAATGATTCGCCTCCAGCAGAAAGGGAGCCAGGAGAAGTTGTGGACAGCCTGG
TAGGCAAGCAAGTGGAATATGCCAAAGAAGACGGCTCGAAAAGGACTGGCATGGTCATCCATCAAGTAGAGGCCAAGCCC
TCTGTCTATTTCATCAAGTTTGATGACGACTTCCATATTTACGTCTACGATTTGGTGAAAACATCCTAG

Library Parental gene expression (RPM)
SRP017611_brain 9 .92 RPM
SRP017611_kidney 6 .56 RPM
SRP017611_liver 1 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003301 ortholog_one2many 4 retrogenes
retro_amel_1831, retro_amel_1879, retro_amel_38, retro_amel_41,
Bos taurus ENSBTAG00000003044 ortholog_one2many 4 retrogenes
retro_btau_1678, retro_btau_1841, retro_btau_187, retro_btau_553,
Canis familiaris ENSCAFG00000002208 ortholog_one2many 3 retrogenes
retro_cfam_153, retro_cfam_2095, retro_cfam_59,
Choloepus hoffmanni ENSCHOG00000006983 ortholog_one2many 2 retrogenes
retro_chof_1343, retro_chof_1852,
Callithrix jacchus ENSCJAG00000017452 ortholog_one2many 1 retrogene
retro_cjac_227,
Cavia porcellus ENSCPOG00000000743 ortholog_one2many 1 retrogene
retro_cpor_123,
Echinops telfairi ENSETEG00000013719 ortholog_one2many 1 retrogene
retro_etel_28,
Felis catus ENSFCAG00000007197 ortholog_one2many 2 retrogenes
retro_fcat_32, retro_fcat_70,
Homo sapiens ENSG00000106723 ortholog_one2many 1 retrogene
retro_hsap_64,
Loxodonta africana ENSLAFG00000027497 ortholog_one2many 2 retrogenes
retro_lafr_18, retro_lafr_58,
Microcebus murinus ENSMICG00000014510 ortholog_one2many 1 retrogene
retro_mmur_8,
Myotis lucifugus ENSMLUG00000008516 ortholog_one2many 2 retrogenes
retro_mluc_132, retro_mluc_1626,
Mustela putorius furo ENSMPUG00000008585 ortholog_one2many 1 retrogene
retro_mputfur_139,
Mus musculus ENSMUSG00000021395 ortholog_one2many 3 retrogenes
retro_mmus_112, retro_mmus_16, retro_mmus_3351,
Oryctolagus cuniculus ENSOCUG00000011880 ortholog_many2many 1 retrogene
retro_ocun_63,
Otolemur garnettii ENSOGAG00000002166 ortholog_one2many 2 retrogenes
retro_ogar_2327, retro_ogar_9,
Procavia capensis ENSPCAG00000015800 ortholog_one2many 1 retrogene
retro_pcap_14,
Pongo abelii ENSPPYG00000019355 ortholog_one2many 1 retrogene
retro_pabe_33,
Pan troglodytes ENSPTRG00000021088 ortholog_one2many 2 retrogenes
retro_ptro_116, retro_ptro_95,
Pteropus vampyrus ENSPVAG00000013391 ortholog_one2many 3 retrogenes
retro_pvam_2, retro_pvam_22, retro_pvam_858,
Ictidomys tridecemlineatus ENSSTOG00000029107 ortholog_one2many 1 retrogene
retro_itri_136,
Tursiops truncatus ENSTTRG00000005602 ortholog_one2many 6 retrogenes
retro_ttru_1061, retro_ttru_13, retro_ttru_1452, retro_ttru_1506, retro_ttru_1669, retro_ttru_1698,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_281 72.93 87.02
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2. retro_rnor_1483 72.26 51.53
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3. retro_rnor_1531 98.85 100.00
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4. retro_rnor_2818 79.43 66.03
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Download FASTA sequences of all ENSRNOG00000011119 retrocopies