RetrogeneDB ID: | retro_rnor_258 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 11:70733910..70734897(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000002253 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Wdr5 | ||
Ensembl ID: | ENSRNOG00000008212 | ||
Aliases: | None | ||
Description: | WD repeat-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q498M4] |
Percent Identity: | 83.01 % |
Parental protein coverage: | 93.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS |
SA.Q....P.KPNYAL..TLAGH..A.SSVKFSPNGEWLASS.AD.LI.IWGAYDGK..KT..GH.L.IS | |
Retrocopy | SAPQRVEEPQKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGKCKKTLYGHSLEIS |
Parental | DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG |
DVAWSSDS..LVSASDDKTLK.WDV.SGKCLKTLKGHS..VFCC.FNP.SNLIVSGSFDESV.IW.VKTG | |
Retrocopy | DVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTG |
Parental | KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA |
KCLKTL.AHSDP.SAVHF...GSLIVS.SYDGLCRIWD.ASGQCL.TL.D..NPPVSFVKFSPNGKYIL. | |
Retrocopy | KCLKTLSAHSDPISAVHFHCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILT |
Parental | ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT |
ATLD.TLKLWDYS.G.CLKTYTGHKNEKYCIFA.FSVTG.KW.VSGSEDN.VYIWNLQTKEIVQ.LQGHT | |
Retrocopy | ATLDSTLKLWDYSRGRCLKTYTGHKNEKYCIFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHT |
Parental | DVVISTACHPTENIIASAALENDKTIKLWKSD |
DVVIS.ACHPTENIIASAALENDKTIK.W.SD | |
Retrocopy | DVVISAACHPTENIIASAALENDKTIKIWSSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .16 RPM | 28 .26 RPM |
SRP017611_kidney | 2 .44 RPM | 26 .03 RPM |
SRP017611_liver | 1 .01 RPM | 19 .16 RPM |