Parental gene:

Tmem126a, ENSRNOG00000022748

Aliases:Tmem126a, RGD1305677
Description:Transmembrane protein 126A [Source:UniProtKB/Swiss-Prot;Acc:Q5HZA9]
Organism:Rat (Rattus norvegicus)
Coordinates:1:162529249..162537179(+)


>ENSRNOG00000022748
ATGGAAAGTCATAAACCAAGTACTAACAAAGATGATTTAATATTTAATATCATACCCAGAAAAATCAAACAACTTCCAGA
ATCAGACAGGAATCTGCTTGAATATGGATCAGCATATATTGGACTTAATGCTGCTTTTGGGGGCCTAATAGCAAACAGTC
TATTTCGGCGAATTTTGAACGTGACACAAGCTCGAGTAGCATCTAGCTTGCCAATGGCTGTGATCCCATTTTTGACAGCA
AACCTGTCCTACCATAGTTTTGTAAGTTTACCTTTGAGTACAGGTAATTTGAACTGTGAAATCTGTACGACAACACGGGG
TACACTAGTTGGTTTTGTTCTGGGTGGTCTGTACCCCATCCTTTTGGCTATACCCGTGAATGGGGGCCTTGCTGCCAGGT
ATGAATCAAGTCCTCTACCACAGAGGGGAAACATCTTCAATTACTGGATTACTATTTCTAAGCCTGTCTTTAGAAAAATG
TTATTTCCTACTTTACTTCAGACTGCTTTTGCAGCATATCTTGGGTCTAGACAATATAAACTCCTCATAAAGGCCCTTCA
GTTACCTGAACCTGATTTAGAAATTCAATGA

Library Parental gene expression (RPM)
SRP017611_brain 12 .80 RPM
SRP017611_kidney 19 .47 RPM
SRP017611_liver 13 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008703 ortholog_one2one 2 retrogenes
retro_amel_358, retro_amel_422,
Bos taurus ENSBTAG00000000451 ortholog_one2many 2 retrogenes
retro_btau_1849, retro_btau_223,
Canis familiaris ENSCAFG00000030913 ortholog_one2one 1 retrogene
retro_cfam_725,
Callithrix jacchus ENSCJAG00000014466 ortholog_one2one 1 retrogene
retro_cjac_4040,
Dasypus novemcinctus ENSDNOG00000004391 ortholog_one2one 7 retrogenes
retro_dnov_1741, retro_dnov_2634, retro_dnov_2676, retro_dnov_484, retro_dnov_549, retro_dnov_951, retro_dnov_984,
Dipodomys ordii ENSDORG00000006408 ortholog_one2one 2 retrogenes
retro_dord_120, retro_dord_656,
Erinaceus europaeus ENSEEUG00000009105 ortholog_one2one 3 retrogenes
retro_eeur_24, retro_eeur_340, retro_eeur_615,
Echinops telfairi ENSETEG00000007180 ortholog_one2one 2 retrogenes
retro_etel_1693, retro_etel_667,
Felis catus ENSFCAG00000027606 ortholog_one2many 3 retrogenes
retro_fcat_1015, retro_fcat_1320, retro_fcat_48,
Homo sapiens ENSG00000171202 ortholog_one2one 2 retrogenes
retro_hsap_1510, retro_hsap_3306,
Gorilla gorilla ENSGGOG00000027742 ortholog_one2one 2 retrogenes
retro_ggor_1157, retro_ggor_1308,
Macropus eugenii ENSMEUG00000011625 ortholog_one2one 1 retrogene
retro_meug_1914,
Microcebus murinus ENSMICG00000005510 ortholog_one2one 3 retrogenes
retro_mmur_1382, retro_mmur_941, retro_mmur_956,
Myotis lucifugus ENSMLUG00000005896 ortholog_one2one 3 retrogenes
retro_mluc_1150, retro_mluc_1290, retro_mluc_1951,
Macaca mulatta ENSMMUG00000016542 ortholog_one2one 2 retrogenes
retro_mmul_2073, retro_mmul_2146,
Mustela putorius furo ENSMPUG00000009968 ortholog_one2one 2 retrogenes
retro_mputfur_1077, retro_mputfur_720,
Mus musculus ENSMUSG00000030615 ortholog_one2one 3 retrogenes
retro_mmus_1431, retro_mmus_1531, retro_mmus_3555,
Nomascus leucogenys ENSNLEG00000016408 ortholog_one2one 2 retrogenes
retro_nleu_1751, retro_nleu_2500,
Oryctolagus cuniculus ENSOCUG00000016534 ortholog_one2one 1 retrogene
retro_ocun_1120,
Otolemur garnettii ENSOGAG00000005403 ortholog_one2many 12 retrogenes
retro_ogar_1020, retro_ogar_2016, retro_ogar_2083, retro_ogar_2118, retro_ogar_2379, retro_ogar_26, retro_ogar_2825, retro_ogar_2883, retro_ogar_3054, retro_ogar_3385, retro_ogar_661, retro_ogar_787,
Pongo abelii ENSPPYG00000003739 ortholog_one2one 2 retrogenes
retro_pabe_1258, retro_pabe_2726,
Pan troglodytes ENSPTRG00000004134 ortholog_one2one 2 retrogenes
retro_ptro_1022, retro_ptro_2165,
Pteropus vampyrus ENSPVAG00000006197 ortholog_one2one 2 retrogenes
retro_pvam_1411, retro_pvam_254,
Ictidomys tridecemlineatus ENSSTOG00000016101 ortholog_one2many 2 retrogenes
retro_itri_108, retro_itri_165,
Tupaia belangeri ENSTBEG00000009157 ortholog_one2one 5 retrogenes
retro_tbel_3441, retro_tbel_3720, retro_tbel_3785, retro_tbel_4072, retro_tbel_4111,
Tarsius syrichta ENSTSYG00000009071 ortholog_one2one 6 retrogenes
retro_tsyr_1371, retro_tsyr_1457, retro_tsyr_1934, retro_tsyr_580, retro_tsyr_735, retro_tsyr_974,
Tursiops truncatus ENSTTRG00000012008 ortholog_one2one 2 retrogenes
retro_ttru_1091, retro_ttru_415,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_918 92.24 58.67
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2. retro_rnor_1706 54.81 68.37
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3. retro_rnor_2844 77.84 83.16
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Download FASTA sequences of all ENSRNOG00000022748 retrocopies