RetrogeneDB ID: | retro_dnov_951 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_12619:58989..59581(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM126A | ||
Ensembl ID: | ENSDNOG00000004391 | ||
Aliases: | None | ||
Description: | transmembrane protein 126A [Source:HGNC Symbol;Acc:25382] |
Percent Identity: | 91. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MENQEPDNTIKENLT-TLNIITRKINQLPEVERNLFEHGSTYIGLNAALCGLIANSLFRRVLNVTQARIA |
MENQEPD.TIKENLT.T.NI.TRKINQLPEVE.NLFEHGSTYIGLNAALCGLIAN.LFR.VLNVTQARIA | |
Retrocopy | MENQEPDDTIKENLT<TFNIVTRKINQLPEVESNLFEHGSTYIGLNAALCGLIANGLFRHVLNVTQARIA |
Parental | AGLPMAVIPFLTAHASYKGFVSLPLTTGDLNCETCTVTRGGLV-GLVFGGLYPVFLAIPVNGGLAARYIS |
AGLPM.VIPFLTAHAS.KGF.SLPLTTGDLNCETCTVT.GGLV..LVFGGLYPV.LAIPVNGGLAARYIS | |
Retrocopy | AGLPMEVIPFLTAHASFKGFISLPLTTGDLNCETCTVTQGGLV<CLVFGGLYPVSLAIPVNGGLAARYIS |
Parental | AVLPERGNILTYWIRISKPVFRKMLFPILLQTVFAAYLGSRQYKLLIKALQLPEPGLESH |
AVLPE.GNI.TYWIRISKPVFRKMLFPILLQTVFAAYLGSRQYKLLIK.LQLPEPGLE.H | |
Retrocopy | AVLPEKGNIFTYWIRISKPVFRKMLFPILLQTVFAAYLGSRQYKLLIKVLQLPEPGLEIH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 20 .03 RPM |
SRP012922_cerebellum | 0 .00 RPM | 11 .96 RPM |
SRP012922_heart | 0 .00 RPM | 23 .67 RPM |
SRP012922_kidney | 0 .00 RPM | 20 .26 RPM |
SRP012922_liver | 0 .00 RPM | 12 .23 RPM |
SRP012922_lung | 0 .00 RPM | 11 .76 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 44 .48 RPM |
SRP012922_spleen | 0 .00 RPM | 17 .17 RPM |