Parental gene: | PSMD8, ENSSSCG00000002956 |
| Aliases: | None |
| Description: | proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 [Source:HGNC Symbol;Acc:9566] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 6:42790023..42797529(+) |
>ENSSSCG00000002956
ATGTTCGTGAAAGGCCGGCCTTCGAGGGCACCTCCCCGAAAGCGACTGAGCACCAAGCGCGGAGTGCGGAGGCCCACAGT
CGCAGCCCCGCCCCCGGCTTTGGGCTCCACCTACCGAGCCCACTTCCGCCGGGCAAGCGGCAGTAGGCGTCGCTGCCGTA
AATCGGCTCGGCGGTTTGCCGCATCACGGAAGATGGCGGCCGCGACGGTGAACGGGGTGGCTGGCGGCTCGAGCTCGGGG
CCTGCAGCGGCCTCGGGCGCAGTCCTGCAGGCCGCAGCCGGTATGTACGAACAACTCAAGGGCGAGTGGAACCGTAAAAG
CCCCAATCTTAGCAAATGCGGTGAAGAACTGGGCCGTCTCAAGCTGGTTCTGTTGGAGCTCAACTTCCTGCCAACCACAG
GGACCAAACTGACCAAACAGCAGCTCATTCTGGCCCGTGACATACTGGAGATCGGGGCCCAGTGGAGTATCTTACGCAAG
GACATCCCCTCCTTCGAGCGGTACATGGCCCAGCTCAAATGTTACTACTTCGATTACAAGGAGCAGCTCCCGGAGTCAGC
CTATATGCACCAGCTCTTGGGGCTCAACCTCCTCTTCCTGCTGTCCCAGAACCGGGTGGCTGAGTTCCACACAGAGCTGG
AGCGGCTGCCTGCCAAGGACATCCAGACCAATGTGTACATCAAGCATCCGGTGTCTCTGGAGCAATACCTGATGGAGGGC
AGCTACAACAAGGTGTTCCTGGCCAAAGGCAACATCCCTGCTGAGAGCTATACCTTCTTCATTGACATCCTGCTTGACAC
TATCAGGGACGAGATTGCTGGCTGCATCGAGAAGGCCTATGAAAAAATCCTCTTCACCGAGGCCACTCGGATCCTCTTCT
TCAACACACCCAAAAAGATGACGGACTACGCCAAGAAGCGAGGGTGGGTCCTGGGCCTCAACAACTACTACAGCTTTGCC
AGCCAGCAGCAGAAGCCAGAAGATACCACCATCCCTTCTACGGAGCTGGCCAAACAGGTCATCGAGTACGCCCGGCAGCT
GGAGATGATTGTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 104 .99 RPM |
| SRP014902_testis | 60 .40 RPM |
| SRP018288_heart | 46 .76 RPM |
| SRP018288_kidney | 81 .86 RPM |
| SRP018288_liver | 98 .66 RPM |
| SRP018288_lung | 69 .45 RPM |
| SRP018856_adipose | 73 .63 RPM |
| SRP035408_brain | 85 .53 RPM |
| SRP035408_liver | 67 .22 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000005931 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000009902 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000013151 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000014464 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_195 | 86.01 | 83.48 | Please wait, loading  |
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Download FASTA sequences of all ENSSSCG00000002956 retrocopies