Parental gene:

PABPC4, ENSSSCG00000003660

Aliases:None
Description:poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:8557]
Organism:Pig (Sus scrofa)
Coordinates:6:88468835..88485036(-)


>ENSSSCG00000003660
ATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCCTGTACGTGGGTGACCTGCACTCGGACGTCACCGAGGCCATGCT
GTACGAAAAGTTCAGTCCTGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCCCTGGGTT
ATGCCTACGTCAACTTCCAGCAGCCGGCTGACGCTGAGCGGGCCTTGGATACCATGAACTTTGATGTGATTAAGGGAAAG
CCAATCCGTATCATGTGGTCTCAGAGGGATCCCTCTTTGAGGAAATCTGGCGTGGGAAATGTCTTCATCAAGAACCTGGA
CAAATCAATAGATAACAAGGCACTTTATGATACTTTTTCTGCTTTTGGAAACATTCTGTCCTGCAAGGTGGTGTGTGATG
AGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTCGAGACCCAAGAGGCTGCCGACAAGGCCATCGAGAAGATGAACGGC
ATGCTCCTCAATGACCGCAAAGTGTTTGTGGGTAGATTCAAGTCTCGAAAAGAGCGAGAAGCTGAGCTTGGAGCCAAAGC
CAAGGAATTCACCAATGTTTATATCAAAAACTTTGGAGAAGAGGTGGATGATGAGAATCTGAAAGAGCTCTTCAGCCAGT
TTGGTAAGACCTTAAGTGTCAAGGTGATGAGAGATCCCAGTGGGAAATCCAAAGGCTTTGGCTTTGTGAGTTACGAAAAA
CACGAGGATGCCAATAAGGCTGTGGAAGAGATGAATGGAAAAGAAATCAGTGGGAAGGTCATTTTTGTCGGCCGTGCACA
GAAGAAAGTGGAACGGCAGGCTGAGTTAAAGCGGAAATTTGAACAGCTGAAACAGGAGAGAATTAGTCGCTATCAGGGGG
TGAATCTCTACATTAAGAACTTGGATGACACCATTGATGATGAGAAGTTAAGGAAAGAGTTTTCTCCTTTTGGATCAATC
ACCAGTGCTAAGGTGATGCTGGAGGATGGGAGAAGCAAAGGGTTTGGCTTTGTTTGCTTCTCATCCCCTGAAGAGGCAAC
CAAAGCAGTCACTGAGATGAATGGACGCATCGTGGGCTCCAAGCCGCTCTATGTTGCCCTGGCCCAGAGAAAGGAAGAGA
GAAAGGCTCACCTGACCAACCAGTACATGCAGCGGGTGGCCGGGATGAGAGCGCTCCCCGCCAATGCCATCCTAAATCAG
TTCCAGCCTGCGGCAGGGGGCTACTTTGTGCCAGCAGTTCCACAGGCTCAGGGAAGACCTCCATATTACACACCTAACCA
GTTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGCTATAC
GCCAGTCTGGGCCTCGTCCAGCTCTTCGCCATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGCGGCCTCCCTACTACC
GCTCAGAGAGTCGGTGTTCCCACAGCTGTGCAGAACTTAGCGCCTCGTGCTGCTGTTGCTACCGCTGCTCCTCGGGCTGT
TGCACCTTACAAATACGCGTCCAGTGTCCGCAGCCCTCACCCTGCCATCCAGCCTCTGCAGGCACCCCAGCCTGCAGTCC
ATGTGCAGGGGCAGGAGCCACTGACCGCATCCATGCTGGCCGCAGCACCCCCCCAGGAACAGAAGCAGATGCTGGGTGAA
CGTTTGTTCCCACTCATCCAGACCATGCACTCAAACCTGGCTGGGAAGATTACGGGGATGCTGCTGGAGATTGACAACTC
AGAGCTGCTGCACATGCTGGAGTCCCCCGAGTCTCTCCGCTCCAAGGTGGATGAAGCTGTAGCGGTCCTACAGGCTCATC
ATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCGCTGTTGCTGCTGCTACCTCTTAG

Library Parental gene expression (RPM)
SRP014902_placenta 231 .22 RPM
SRP014902_testis 201 .70 RPM
SRP018288_heart 115 .04 RPM
SRP018288_kidney 59 .20 RPM
SRP018288_liver 85 .23 RPM
SRP018288_lung 48 .16 RPM
SRP018856_adipose 136 .76 RPM
SRP035408_brain 63 .71 RPM
SRP035408_liver 96 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011535 ortholog_one2one 2 retrogenes
retro_amel_107, retro_amel_676,
Bos taurus ENSBTAG00000017125 ortholog_one2one 3 retrogenes
retro_btau_1492, retro_btau_28, retro_btau_656,
Canis familiaris ENSCAFG00000003081 ortholog_one2one 2 retrogenes
retro_cfam_45, retro_cfam_837,
Choloepus hoffmanni ENSCHOG00000005327 ortholog_one2one 3 retrogenes
retro_chof_1150, retro_chof_1182, retro_chof_1274,
Equus caballus ENSECAG00000009396 ortholog_one2one 2 retrogenes
retro_ecab_2, retro_ecab_502,
Felis catus ENSFCAG00000015254 ortholog_one2one 2 retrogenes
retro_fcat_116, retro_fcat_545,
Loxodonta africana ENSLAFG00000000151 ortholog_one2one 3 retrogenes
retro_lafr_1144, retro_lafr_390, retro_lafr_597,
Microcebus murinus ENSMICG00000016633 possible_ortholog 1 retrogene
retro_mmur_675,
Myotis lucifugus ENSMLUG00000012068 ortholog_one2one 2 retrogenes
retro_mluc_228, retro_mluc_397,
Monodelphis domestica ENSMODG00000017657 ortholog_one2many 2 retrogenes
retro_mdom_1090, retro_mdom_1805,
Mustela putorius furo ENSMPUG00000014414 ortholog_one2one 2 retrogenes
retro_mputfur_152, retro_mputfur_546,
Mus musculus ENSMUSG00000011257 ortholog_one2many 7 retrogenes
retro_mmus_2006, retro_mmus_2326, retro_mmus_2327, retro_mmus_798, retro_mmus_801, retro_mmus_803, retro_mmus_805,
Rattus norvegicus ENSRNOG00000015642 ortholog_one2many 2 retrogenes
retro_rnor_175, retro_rnor_92,
Sarcophilus harrisii ENSSHAG00000018139 ortholog_one2one 1 retrogene
retro_shar_823,
Sus scrofa ENSSSCG00000000402 other_paralog 1 retrogene
retro_sscr_546,
Sus scrofa ENSSSCG00000006063 within_species_paralog 2 retrogenes
retro_sscr_1153, retro_sscr_1205,
Tursiops truncatus ENSTTRG00000014340 ortholog_one2one 2 retrogenes
retro_ttru_1117, retro_ttru_246,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_974 74.93 58.80
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2. retro_sscr_975 75.31 50.71
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3. retro_sscr_1210 66.03 57.69
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Download FASTA sequences of all ENSSSCG00000003660 retrocopies