Parental gene:

Pabpc4, ENSMUSG00000011257

Aliases:None
Description:poly(A) binding protein, cytoplasmic 4 [Source:MGI Symbol;Acc:MGI:2385206]
Organism:Mouse (Mus musculus)
Coordinates:4:123262350..123298925(+)


>ENSMUSG00000011257
ATGAACGCTGCAGCCAGCAGCTACCCCATGGCCTCCTTATACGTGGGCGATTTGCACTCGGACGTCACCGAAGCCATGCT
GTATGAAAAGTTTAGCCCTGCGGGGCCTGTGCTGTCCATCCGGGTCTGTCGCGATATGATCACCCGGCGCTCTCTGGGTT
ATGCCTACGTCAACTTCCAGCAGCCAGCTGACGCTGAGAGGGCCTTGGACACCATGAACTTCGACGTGATGAAGGGAAAG
CCGATCCGCATCATGTGGTCGCAGAGGGATCCCTCGTTGAGAAAATCTGGGGTGGGAAATGTCTTCATCAAGAACCTGGA
CAAATCCATAGACAACAAGGCACTGTATGACACTTTCTCTGCCTTTGGAAACATCTTGTCCTGTAAGGTGGTCTGTGATG
AGAACGGCTCTAAGGGCTATGCTTTTGTTCACTTCGAGACCCAAGAGGCCGCCGACAAGGCCATCGAGAAGATGAATGGC
ATGCTTCTCAATGACCGTAAAGTGTTCGTGGGTAGATTCAAGTCTCGCAAAGAGCGGGAAGCGGAGCTTGGAGCCAAGGC
CAAGGAATTCACCAATGTTTATATCAAAAACTTTGGAGAAGAGGTGGATGATGGGAATCTGAAAGAGCTCTTCAGCCAGT
TTGGTAAGACCCTAAGTGTCAAGGTGATGAGAGACTCCAGTGGGAAGTCCAAAGGCTTTGGCTTTGTAAGTTACGAGAAA
CACGAGGATGCCAATAAGGCTGTGGAAGAAATGAATGGAAAGGAAATGAGCGGGAAAGCCATATTTGTAGGCCGTGCACA
GAAAAAGGTAGAAAGGCAGGCTGAGCTGAAGCGGAAGTTTGAGCAGCTCAAGCAGGAGAGGATTAGCCGGTACCAGGGGG
TGAATCTCTACATTAAGAACTTGGATGACACCATTGATGATGAGAAATTGAGGAGAGAGTTTTCTCCCTTTGGATCAATC
ACCAGCGCGAAGGTGATGCTAGAAGATGGGAGAAGCAAAGGGTTTGGCTTTGTCTGTTTCTCCTCTCCTGAAGAGGCGAC
CAAAGCTGTCACCGAGATGAATGGACGCATTGTGGGCTCCAAGCCTCTGTACGTCGCCCTGGCCCAGAGGAAGGAAGAGC
GGAAGGCTCATCTGACCAACCAGTACATGCAGCGTGTGGCGGGGATGAGAGCACTCCCTGCCAGTGCCATCTTAAATCAG
TTCCAGCCTGCAGCTGGTGGCTATTTTGTGCCTGCAGTTCCGCAGGCTCAGGGAAGACCCCCATATTACACGCCTAACCA
GTTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGCGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGCCCTGC
GGCAGTCTGGGCCTCGTCCAGCTCTTCGACATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTTCCTACTACT
GCTCAGAGAGTCGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGGCTGAC
TGACAGCTGCCAGTCTGGAGGCGTCCCTACAGCCGTGCCAAACCTTGCACCTCGGGCCGCAGTTGCTGCCGCCGCTCCCA
GGGCTGTGGCTCCATACAAGTACGCCTCCAGTGTCCGCAGCCCACACCCTGCCATCCAGCCGCTGCAGGCCCCCCAGCCT
GCAGTCCACGTCCAGGGTCAGGAGCCCCTGACTGCCTCCATGCTTGCTGCAGCGCCCCCCCAGGAGCAGAAGCAGATGCT
GGGGGAGCGTCTGTTCCCGCTTATCCAAACAATGCATTCAAACCTGGCTGGGAAAATCACCGGGATGCTGCTGGAAATCG
ACAACTCTGAGCTGCTGCACATGCTGGAGTCCCCCGAGTCCCTCCGCTCCAAGGTAGATGAAGCGGTGGCAGTCCTGCAG
GCTCACCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCACTGTTGCTGCTGCTACCTCTTAG

Library Parental gene expression (RPM)
SRP007412_brain 13 .06 RPM
SRP007412_cerebellum 9 .60 RPM
SRP007412_heart 120 .01 RPM
SRP007412_kidney 35 .50 RPM
SRP007412_liver 16 .19 RPM
SRP007412_testis 3 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011535 ortholog_many2many 2 retrogenes
retro_amel_107, retro_amel_676,
Bos taurus ENSBTAG00000017125 ortholog_one2many 3 retrogenes
retro_btau_1492, retro_btau_28, retro_btau_656,
Canis familiaris ENSCAFG00000003081 ortholog_one2many 2 retrogenes
retro_cfam_45, retro_cfam_837,
Choloepus hoffmanni ENSCHOG00000005327 ortholog_one2many 3 retrogenes
retro_chof_1150, retro_chof_1182, retro_chof_1274,
Callithrix jacchus ENSCJAG00000002512 ortholog_one2many 3 retrogenes
retro_cjac_214, retro_cjac_2722, retro_cjac_284,
Cavia porcellus ENSCPOG00000009552 ortholog_one2many 2 retrogenes
retro_cpor_1330, retro_cpor_77,
Equus caballus ENSECAG00000009396 ortholog_one2many 2 retrogenes
retro_ecab_2, retro_ecab_502,
Felis catus ENSFCAG00000015254 ortholog_many2many 2 retrogenes
retro_fcat_116, retro_fcat_545,
Homo sapiens ENSG00000090621 ortholog_one2many 2 retrogenes
retro_hsap_109, retro_hsap_74,
Gorilla gorilla ENSGGOG00000004002 ortholog_one2many 3 retrogenes
retro_ggor_2127, retro_ggor_87, retro_ggor_916,
Loxodonta africana ENSLAFG00000000151 ortholog_one2many 3 retrogenes
retro_lafr_1144, retro_lafr_390, retro_lafr_597,
Microcebus murinus ENSMICG00000016633 ortholog_many2many 1 retrogene
retro_mmur_675,
Myotis lucifugus ENSMLUG00000012068 ortholog_one2many 2 retrogenes
retro_mluc_228, retro_mluc_397,
Macaca mulatta ENSMMUG00000007497 ortholog_one2many 1 retrogene
retro_mmul_178,
Monodelphis domestica ENSMODG00000017657 ortholog_many2many 2 retrogenes
retro_mdom_1090, retro_mdom_1805,
Mustela putorius furo ENSMPUG00000014414 ortholog_many2many 2 retrogenes
retro_mputfur_152, retro_mputfur_546,
Mus musculus ENSMUSG00000022283 within_species_paralog 2 retrogenes
retro_mmus_102, retro_mmus_2164,
Mus musculus ENSMUSG00000040043 other_paralog 1 retrogene
retro_mmus_1530,
Nomascus leucogenys ENSNLEG00000011928 ortholog_one2many 2 retrogenes
retro_nleu_1517, retro_nleu_62,
Oryctolagus cuniculus ENSOCUG00000000562 ortholog_one2many 2 retrogenes
retro_ocun_153, retro_ocun_792,
Otolemur garnettii ENSOGAG00000004067 ortholog_one2many 1 retrogene
retro_ogar_71,
Ochotona princeps ENSOPRG00000011984 ortholog_one2many 1 retrogene
retro_opri_1133,
Pongo abelii ENSPPYG00000001506 ortholog_one2many 2 retrogenes
retro_pabe_190, retro_pabe_2563,
Pan troglodytes ENSPTRG00000000573 ortholog_one2many 3 retrogenes
retro_ptro_101, retro_ptro_2093, retro_ptro_8,
Rattus norvegicus ENSRNOG00000015642 ortholog_many2many 2 retrogenes
retro_rnor_175, retro_rnor_92,
Sarcophilus harrisii ENSSHAG00000018139 ortholog_one2many 1 retrogene
retro_shar_823,
Sus scrofa ENSSSCG00000003660 ortholog_one2many 3 retrogenes
retro_sscr_1210, retro_sscr_974, retro_sscr_975,
Tursiops truncatus ENSTTRG00000014340 ortholog_one2many 2 retrogenes
retro_ttru_1117, retro_ttru_246,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_798 94.70 100.00
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2. retro_mmus_801 94.70 100.00
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3. retro_mmus_803 94.40 100.00
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4. retro_mmus_805 94.55 100.00
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5. retro_mmus_2006 83.17 62.42
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6. retro_mmus_2326 88.81 84.85
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7. retro_mmus_2327 89.88 84.85
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Download FASTA sequences of all ENSMUSG00000011257 retrocopies