Parental gene:

ENSSSCG00000006063

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:4:39134108..39152341(+)


>ENSSSCG00000006063
ATGAACCCCAGCGCCCCCAGCTACCCCATGGCCTCGCTCTACGTGGGGGACCTACACCCCGACGTGACCGAGGCGATGCT
CTACGAGAAGTTCAGCCCGGCCGGGCCCATCCTCTCCATCCGGGTCTGCAGGGACATGATCACCCGCCGCTCCTTGGGCT
ACGCGTATGTGAACTTCCAGCAGCCGGCGGACGCGGAGCGTGCTTTGGACACCATGAATTTTGATGTTATAAAGGGCAAG
CCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGCAAAAGTGGAGTGGGCAACATATTCATTAAAAATTTGGA
CAAATCCATTGATAATAAAGCACTGTATGATACATTTTCAGCTTTTGGTAACATCCTTTCATGTAAGGTGGTTTGTGATG
AAAATGGTTCCAAGGGTTATGGATTTGTGCATTTTGAGACACAAGAAGCAGCTGAAAGAGCTATTGAAAAAATGAATGGG
ATGCTTCTAAATGATCGAAAAGTATTCGTTGGACGATTTAAGTCTCGTAAAGAACGAGAAGCCGAACTTGGAGCTAGGGC
AAAAGAGTTCACCAATGTTTACATCAAGAATTTTGGAGAAGACATGGATGATGAGCGCCTTAAGGATCTCTTTGGCAAGT
TTGGACCTGCCTTAAGTGTGAAAGTAATGACTGACGAGAGTGGAAAATCCAAAGGTTTTGGATTTGTAAGCTTTGAAAGG
CATGAAGATGCACAGAAAGCCGTAGATGAAATGAATGGAAAGGAGCTCAATGGAAAACAAATTTACGTCGGTCGAGCCCA
GAAAAAAGTGGAACGGCAGACGGAACTTAAGCGCAAATTTGAACAGATGAAGCAAGATAGGATCACCAGATACCAGGGTG
TTAACCTTTATGTGAAAAATCTTGATGATGGTATTGATGATGAACGTCTCCGGAAAGAGTTTTCTCCATTTGGTACAATC
ACTAGTGCAAAGGTTATGATGGAGGGTGGTCGCAGCAAAGGTTTCGGTTTTGTTTGTTTCTCCTCCCCAGAAGAAGCCAC
TAAAGCAGTTACAGAAATGAATGGTAGAATTGTGGCCACCAAGCCATTGTATGTAGCTTTAGCTCAGCGCAAAGAAGAGC
GCCAGGCCCACCTCACTAACCAGTATATGCAGAGAATGGCAAGTGTAAGAGCTGTGCCCAACCCTGTAATCAACCCCTAC
CAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAGACTCAGAACCGTGCTGCATACTATCCTCCTAGCCA
AATTGCTCAACTAAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATCCATTCCAAAACATGCCCGGTGCTA
TCCGCCCAGCTGCTCCTAGACCACCATTTAGTACTATGAGACCAGCTTCTTCACAGGTTCCACGAGTCATGTCCACACAG
CGTGTTGAAGTTGGTCTCCAATTTGAAATAACAAGTTCAGCTAACACATCAACACAGACAATGGGTCCACGTCCTGCAGC
TGCTGCTGCTGCAGCTACTCCTGCTGTTCGCACCGTTCCACAGTATAAATATGCTGCGGGAGTTCGCAATCCTCAACAAC
ATCTTAATGCCCAGCCACAAGTTACCATGCAACAGCCTGCTGTTCATGTACAAGGTCAGGAGCCTTTGACTGCTTCCATG
TTGGCATCTGCCCCTCCTCAAGAGCAGAAGCAAATGTTGGGTGAACGGCTCTTTCCTCTAATTCAAGCCATGCACCCTAC
TCTTGCTGGTAAAATCACTGGCATGTTGTTGGAGATTGATAATTCAGAACTTCTTCATATGCTTGAGTCTCCAGAGTCTC
TCCGTTCTAAAGTTGATGAAGCTGTAGCTGTACTACAAGCTCACCAAGCTAAAGAGGCTGCCCAGAAAGCAGTTAACAGT
GCCACTGGTGTTCCAACTGTTTAA

Library Parental gene expression (RPM)
SRP014902_placenta 902 .97 RPM
SRP014902_testis 607 .37 RPM
SRP018288_heart 245 .70 RPM
SRP018288_kidney 320 .44 RPM
SRP018288_liver 408 .09 RPM
SRP018288_lung 1054 .61 RPM
SRP018856_adipose 862 .54 RPM
SRP035408_brain 558 .09 RPM
SRP035408_liver 472 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015833 ortholog_one2one 5 retrogenes
retro_cjac_1586, retro_cjac_2571, retro_cjac_3218, retro_cjac_4039, retro_cjac_41,
Homo sapiens ENSG00000070756 possible_ortholog 1 retrogene
retro_hsap_88,
Macaca mulatta ENSMMUG00000017786 ortholog_one2one 2 retrogenes
retro_mmul_1462, retro_mmul_895,
Monodelphis domestica ENSMODG00000006222 ortholog_one2many 4 retrogenes
retro_mdom_123, retro_mdom_1867, retro_mdom_216, retro_mdom_43,
Mus musculus ENSMUSG00000022283 ortholog_one2one 2 retrogenes
retro_mmus_102, retro_mmus_2164,
Nomascus leucogenys ENSNLEG00000003142 ortholog_one2one 3 retrogenes
retro_nleu_221, retro_nleu_2412, retro_nleu_611,
Oryctolagus cuniculus ENSOCUG00000004354 possible_ortholog 1 retrogene
retro_ocun_13,
Pongo abelii ENSPPYG00000018790 possible_ortholog 3 retrogenes
retro_pabe_2373, retro_pabe_68, retro_pabe_854,
Pteropus vampyrus ENSPVAG00000016640 ortholog_one2one 2 retrogenes
retro_pvam_10, retro_pvam_855,
Rattus norvegicus ENSRNOG00000008639 ortholog_one2one 3 retrogenes
retro_rnor_1228, retro_rnor_2321, retro_rnor_265,
Sarcophilus harrisii ENSSHAG00000011267 ortholog_one2many 1 retrogene
retro_shar_24,
Sus scrofa ENSSSCG00000000402 other_paralog 1 retrogene
retro_sscr_546,
Sus scrofa ENSSSCG00000003660 within_species_paralog 3 retrogenes
retro_sscr_1210, retro_sscr_974, retro_sscr_975,
Tursiops truncatus ENSTTRG00000004689 ortholog_one2one 2 retrogenes
retro_ttru_1050, retro_ttru_1812,
Vicugna pacos ENSVPAG00000003865 ortholog_one2one 4 retrogenes
retro_vpac_14, retro_vpac_384, retro_vpac_620, retro_vpac_649,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_1153 78.01 51.73
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2. retro_sscr_1205 65.93 62.75
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Download FASTA sequences of all ENSSSCG00000006063 retrocopies