Parental gene:

ARPC1A, ENSSSCG00000007609

Aliases:None
Description:actin related protein 2/3 complex, subunit 1A, 41kDa [Source:HGNC Symbol;Acc:703]
Organism:Pig (Sus scrofa)
Coordinates:3:6434371..6463171(-)


>ENSSSCG00000007609
ATGTCCCTGCATCAGTTTTTACTAGAGCCAATCACCTGTCATGCCTGGAACAGGGATCGTACCCAGATTGCCCTTAGCCC
CAATAATCATGAAGTCCACATATATAAGAAGAATGGGAGCCAGTGGGTGAAAGCTCACGAACTCAAGGAGCACAACGGAC
ACATCACAGGTATTGACTGGGCTCCCAAGAGCGACCGCATCGTCACTTGCGGGGCAGACCGCAATGCCTACGTCTGGAGT
CAGAAAGACGGTGTCTGGAAGCCAACGCTGGTCATCCTGAGAATTAACCGTGCAGCTACTTTCGTCAAGTGGTCCCCGCT
GGAGAACAAATTTGCTGTGGGCAGCGGAGCACGACTCATTTCTGTTTGTTACTTCGAGTCTGAAAATGACTGGTGGGTGA
GCAAGCACATTAAAAAGCCGATTCGCTCCACGGTCCTCAGCTTGGACTGGCATCCCAACAATGTCTTGCTGGCGGCAGGA
TCCTGTGACTTCAAATGCAGAGTGTTTTCTGCCTACATTAAAGAAGTGGATGAAAAGCCAGCCAGTACACCCTGGGGCAG
CAAGATGCCTTTTGGTCAGCTGATGTCAGAGTTTGGTGGCAGTGGCACTGGTGGCTGGGTGCACGGGGTCAGCTTCTCTG
CCAGCGGGAGCCGCCTGGCCTGGGTCAGCCACGACAGCACCGTGTCTGTTGCCGATGCCTCCAAGAGTGTGCAGGTCTCC
ACTCTGAAAACTGAGTTCCTGCCCCTCCTGAGCGTCTCGTTCGTCTCGGAGAACAGCGTCGTGGCTGCCGGCCATGACTG
CTGCCCGATGCTCTTTAACTACGATGACCGCGGCTGCCTGACCTTCGTCTCCAAGCTCGACCTTCCGAAACAGAGCATCC
AGCGCAACCTGTCCGCCATGGAGCGCTTCCGCAACATGGACAAGCGGGCCACGACCGAGGATCGCAACACGGCCCTGGAG
ACGCTGCACCAGAACAGCATCACGCAAGTGTCTATTTATGAGGTGGACAAGCAAGATTGTCGCAAATTTTGCACTACTGG
CATTGACGGAGCCATGACAATTTGGGATTTCAAGACCTTAGAGTCTTCTATCCAGGGCCTTCGGATAATGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 88 .53 RPM
SRP014902_testis 98 .73 RPM
SRP018288_heart 48 .93 RPM
SRP018288_kidney 104 .02 RPM
SRP018288_liver 38 .86 RPM
SRP018288_lung 97 .75 RPM
SRP018856_adipose 86 .41 RPM
SRP035408_brain 51 .93 RPM
SRP035408_liver 25 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000005984 ortholog_one2one 5 retrogenes
retro_dnov_1615, retro_dnov_1839, retro_dnov_1966, retro_dnov_2257, retro_dnov_941,
Macropus eugenii ENSMEUG00000005609 ortholog_one2one 8 retrogenes
retro_meug_1033, retro_meug_1081, retro_meug_1495, retro_meug_1668, retro_meug_1755, retro_meug_1912, retro_meug_2179, retro_meug_492,
Monodelphis domestica ENSMODG00000001303 ortholog_one2one 9 retrogenes
retro_mdom_1360, retro_mdom_1380, retro_mdom_1438, retro_mdom_1551, retro_mdom_1796, retro_mdom_1917, retro_mdom_686, retro_mdom_699, retro_mdom_808,
Oryctolagus cuniculus ENSOCUG00000003944 possible_ortholog 1 retrogene
retro_ocun_1130,
Sarcophilus harrisii ENSSHAG00000010673 ortholog_one2one 2 retrogenes
retro_shar_180, retro_shar_727,
Sus scrofa ENSSSCG00000007625 within_species_paralog 1 retrogene
retro_sscr_374,
Tursiops truncatus ENSTTRG00000003002 ortholog_one2one 4 retrogenes
retro_ttru_1621, retro_ttru_1838, retro_ttru_575, retro_ttru_853,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_387 60.91 52.16
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Download FASTA sequences of all ENSSSCG00000007609 retrocopies