Parental gene:

DESI2, ENSSSCG00000010876

Aliases:DESI2, DeSI-2, FAM152A, PNAS-4, PPPDE1
Description:Sus scrofa PPPDE peptidase domain containing 1 (PPPDE1), mRNA. [Source:RefSeq mRNA;Acc:NM_001097419]
Organism:Pig (Sus scrofa)
Coordinates:10:19696106..19747165(-)


>ENSSSCG00000010876
ATGGGGGCTAACCAATTAGTGGTGCTCAACGTGTACGACATGTACTGGATGAACGAGTACACCTCATCCATCGGAATTGG
AGTTTTTCATTCAGGAATTGAAGTATATGGCAGAGAGTTTGCTTATGGTGGCCATCCTTACCCCTTTTCTGGAATATTTG
AAATTTCCCCAGGAAATGCTTCTGAACTAGGAGAAACATTTAAATTTAAAGAAGCTGTTGTTTTGGGGAGCACTGACTTC
CTAGAAGATGATATAGAAAAAATTGTAGAAGAATTGGGAAAAGAATACAAAGGCAATGCCTATCATTTGATGCATAAAAA
CTGCAATCATTTTTCTTCGGCTTTATCAGAGATTCTTTGTGGGAAGGAGATTCCTCGCTGGATCAATCGACTGGCCTACT
TCAGCTCCTGCATACCCTTCCTCCAGAGCTGCCTCCCGAAGGAGTGGCTGACTCCCGCGGCCCTGCAGTCCAGCGTCAGC
CAGGAGCTCCAGGACGAACTGGAGGAGGCAGAGGATGCGGCGGCCTCCGCCTCCATGGGCAGCGCTTCAGCAGGCTCCAG
GCCTGGGCGCCACACCAAACTCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 82 .03 RPM
SRP014902_testis 52 .62 RPM
SRP018288_heart 27 .61 RPM
SRP018288_kidney 31 .32 RPM
SRP018288_liver 29 .74 RPM
SRP018288_lung 80 .14 RPM
SRP018856_adipose 20 .64 RPM
SRP035408_brain 17 .47 RPM
SRP035408_liver 17 .09 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000016 ortholog_one2one 1 retrogene
retro_chof_2439,
Dasypus novemcinctus ENSDNOG00000003484 ortholog_one2one 3 retrogenes
retro_dnov_1042, retro_dnov_2533, retro_dnov_539,
Erinaceus europaeus ENSEEUG00000009507 ortholog_one2one 2 retrogenes
retro_eeur_394, retro_eeur_470,
Homo sapiens ENSG00000121644 ortholog_one2one 1 retrogene
retro_hsap_2071,
Gorilla gorilla ENSGGOG00000009797 ortholog_one2one 1 retrogene
retro_ggor_1493,
Nomascus leucogenys ENSNLEG00000004019 ortholog_one2one 1 retrogene
retro_nleu_2734,
Ochotona princeps ENSOPRG00000015368 ortholog_one2one 2 retrogenes
retro_opri_1007, retro_opri_963,
Pongo abelii ENSPPYG00000000055 ortholog_one2one 1 retrogene
retro_pabe_1685,
Pan troglodytes ENSPTRG00000002180 ortholog_one2one 1 retrogene
retro_ptro_1384,
Drosophila melanogaster FBgn0033551 ortholog_one2many 1 retrogene
retro_dmel_30,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_388 79.08 100.00
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Download FASTA sequences of all ENSSSCG00000010876 retrocopies