Parental gene:

PDHA1, ENSSSCG00000023643

Aliases:None
Description:pyruvate dehydrogenase (lipoamide) alpha 1 [Source:HGNC Symbol;Acc:8806]
Organism:Pig (Sus scrofa)
Coordinates:X:16947202..16966053(+)


>ENSSSCG00000023643
ATGAGGAAGATGCTCGCCGCCGTCTCCCGCGTGTTGTCGGGCGTCGCCCAGAAGCCGGCAAGCAGAGTGCTGGTGGCGTC
CCGTAACTTTGCAAATGATGCTACATTTGAAATTAAGAAATGTGATCTTCACCGGCTGGAAGAGGGCCCACCTGTCACCA
CGGTGCTCACCAGGGAGGATGGGCTCAAGTACTACAGGATGATGCAGACTGTTCGCCGAATGGAGTTAAAAGCAGATCAG
CTCTATAAACAGAAAATTATTCGTGGTTTCTGTCACTTGTGTGATGGTCAGGAAGCTTGTTGCGTGGGCCTGGAGGCTGG
CATAAACCCTACGGACCATCTGATCACAGCCTACCGAGCTCATGGCTTTACCTTTACTCGTGGGCTTTCTGTCCGGGAAA
TTCTTGCGGAACTTACAGGACGAAGAGGAGGTTGTGGTAAAGGAAAAGGAGGATCGATGCATATGTATGCCAAGAACTTC
TACGGGGGCAATGGCATTGTGGGAGCTCAGGTGCCCCTGGGAGCTGGGATTGCTCTGGCCTGTAAGTATAATGGAAAAGA
TGAGGTCTGTTTGACTTTGTATGGAGATGGTGCTGCTAATCAGGGTCAGATATTTGAAGCTTACAACATGGCAGCTTTGT
GGAAATTGCCTTGTGTTTTCATCTGTGAGAATAATCGCTATGGGATGGGAACGTCTGTGGAGAGAGCCGCAGCCAGCACT
GACTACTATAAGAGAGGCGACTTCATTCCTGGGCTGAGGGTAGATGGAATGGATATCCTGTGTGTCCGGGAGGCCACAAG
GTTTGCAGCTGCCTACTGTAGATCTGGAAAGGGGCCCATACTGATGGAGCTGCAGACTTACCGTTACCATGGACACAGTA
TGAGTGATCCCGGAGTCAGTTACCGTACACGAGAAGAAATTCAGGAAGTAAGAAGTAAGAGTGACCCGATCATGCTTCTC
AAGGATAGAATGGTGAACAGCAATCTTGCCAGTGTTGAAGAATTAAAGGAAATCGATGTTGAAGTGAGGAAAGAAATTGA
GGATGCTGCACAGTTTGCTACTGCTGATCCTGAACCACCTTTGGAAGAACTCGGCTATCACATCTACTGCAACGACCCGC
CTTTTGAAGTCCGGGGTGCAAACCAGTGGATCAAGTTTAAGTCCATCAGTTAA

Library Parental gene expression (RPM)
SRP014902_placenta 28 .67 RPM
SRP014902_testis 69 .87 RPM
SRP018856_adipose 671 .62 RPM
SRP018288_kidney 1343 .52 RPM
SRP018288_lung 86 .35 RPM
SRP018288_liver 173 .34 RPM
SRP018288_heart 888 .93 RPM
SRP035408_liver 161 .16 RPM
SRP035408_brain 105 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016730 ortholog_one2one 1 retrogene
retro_amel_400,
Bos taurus ENSBTAG00000019852 ortholog_one2one 2 retrogenes
retro_btau_100, retro_btau_1807,
Callithrix jacchus ENSCJAG00000005496 ortholog_one2one 2 retrogenes
retro_cjac_2414, retro_cjac_27,
Dipodomys ordii ENSDORG00000011848 ortholog_one2one 1 retrogene
retro_dord_35,
Equus caballus ENSECAG00000001964 ortholog_one2one 1 retrogene
retro_ecab_21,
Erinaceus europaeus ENSEEUG00000005485 ortholog_one2one 1 retrogene
retro_eeur_580,
Homo sapiens ENSG00000131828 ortholog_one2one 1 retrogene
retro_hsap_41,
Gorilla gorilla ENSGGOG00000013574 ortholog_one2one 1 retrogene
retro_ggor_59,
Myotis lucifugus ENSMLUG00000012932 ortholog_one2one 2 retrogenes
retro_mluc_2363, retro_mluc_323,
Macaca mulatta ENSMMUG00000017336 ortholog_one2many 1 retrogene
retro_mmul_123,
Mustela putorius furo ENSMPUG00000003269 ortholog_one2one 1 retrogene
retro_mputfur_812,
Mus musculus ENSMUSG00000031299 ortholog_one2one 2 retrogenes
retro_mmus_63, retro_mmus_631,
Nomascus leucogenys ENSNLEG00000009805 ortholog_one2one 1 retrogene
retro_nleu_74,
Oryctolagus cuniculus ENSOCUG00000014748 ortholog_one2one 1 retrogene
retro_ocun_264,
Pongo abelii ENSPPYG00000020171 ortholog_one2one 1 retrogene
retro_pabe_129,
Pan troglodytes ENSPTRG00000021717 ortholog_one2one 1 retrogene
retro_ptro_79,
Pteropus vampyrus ENSPVAG00000005420 ortholog_one2one 1 retrogene
retro_pvam_1306,
Sarcophilus harrisii ENSSHAG00000015375 ortholog_one2many 1 retrogene
retro_shar_84,
Ictidomys tridecemlineatus ENSSTOG00000015433 ortholog_one2one 1 retrogene
retro_itri_1529,
Tupaia belangeri ENSTBEG00000014313 ortholog_one2one 1 retrogene
retro_tbel_3327,
Tursiops truncatus ENSTTRG00000000660 ortholog_one2one 1 retrogene
retro_ttru_1427,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_281 74.14 58.97
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2. retro_sscr_1015 66.92 100.00
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Download FASTA sequences of all ENSSSCG00000023643 retrocopies